Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ELZ47_RS02125 Genome accession   NZ_LR134002
Coordinates   425133..426059 (+) Length   308 a.a.
NCBI ID   WP_072074535.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 420133..431059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS02115 (NCTC10904_00419) amiA 421596..423572 (+) 1977 WP_125332710.1 peptide ABC transporter substrate-binding protein Regulator
  ELZ47_RS02120 (NCTC10904_00420) amiC 423637..425133 (+) 1497 WP_125332708.1 ABC transporter permease Regulator
  ELZ47_RS02125 (NCTC10904_00421) amiD 425133..426059 (+) 927 WP_072074535.1 oligopeptide ABC transporter permease OppC Regulator
  ELZ47_RS02130 (NCTC10904_00422) amiE 426068..427135 (+) 1068 WP_125445638.1 ABC transporter ATP-binding protein Regulator
  ELZ47_RS02135 (NCTC10904_00423) amiF 427146..428072 (+) 927 WP_125332704.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34597.63 Da        Isoelectric Point: 9.7392

>NTDB_id=1117801 ELZ47_RS02125 WP_072074535.1 425133..426059(+) (amiD) [Streptococcus sanguinis strain NCTC 10904]
MATIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFLKKKSTITMLGILIAIILMSFIYPMFSDFDFNDVSKVNDFSMR
YIKPSGQYWFGTDSNGKSLFDGVWFGARNSILISIIATVINLAIGVIIGGIWGISKTVDRVMMEVYNIISNIPALLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRVQIMRYRDLEYNLASRTLGTPTLKIVTKNIMPQLVSVIVTTTSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLTFFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1117801 ELZ47_RS02125 WP_072074535.1 425133..426059(+) (amiD) [Streptococcus sanguinis strain NCTC 10904]
ATGGCTACAATTGATAAAAGCAAATTCCAATTTGTCAAACGTGACGATTTTGCCTCTGAAACGATTGATGCTCCAGCCTA
CTCTTACTGGAAATCAGTCATGCGTCAATTTCTGAAAAAGAAATCAACCATTACCATGCTGGGAATTCTGATTGCCATTA
TTCTTATGAGCTTCATTTATCCTATGTTTTCAGACTTCGACTTTAATGACGTGAGTAAGGTAAACGACTTTAGCATGCGT
TACATCAAGCCGAGTGGTCAGTACTGGTTCGGAACGGATAGTAATGGTAAGTCTCTCTTTGATGGTGTTTGGTTTGGTGC
TCGTAACTCTATTCTTATTTCGATTATTGCGACAGTTATTAACCTGGCTATCGGAGTTATCATCGGCGGTATCTGGGGAA
TTTCCAAAACAGTTGACCGCGTCATGATGGAAGTCTACAATATCATTTCAAATATCCCGGCCCTCTTGATTGTCATCGTC
TTGACTTACTCTATCGGTGCTGGTTTCTGGAATCTGATTTTTGCCATGACGATTACTGGTTGGGTCGGTATTGCCTACAC
TATCCGTGTGCAGATTATGCGTTATCGGGATTTGGAATACAACCTTGCCTCTCGTACTCTTGGTACACCGACTCTCAAGA
TTGTTACGAAGAACATTATGCCACAGTTGGTATCTGTTATCGTGACCACCACTTCACAGATGCTGCCAAGCTTTATCTCT
TACGAAGCCTTTCTGTCCTTCTTTGGATTAGGTCTTCCTGTAACAGTGCCAAGTTTAGGACGCTTGATCTCAGATTATTC
TCAAAACGTGACGACCAATGCATACCTCTTTTGGATTCCACTTACAACCTTGATTTTGGTATCCCTCACTTTCTTCGTAG
TTGGGCAAAACTTAGCCGACGCCAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

85.714

100

0.857
  amiD Streptococcus thermophilus LMG 18311

83.766

100

0.838
  amiD Streptococcus thermophilus LMD-9

83.766

100

0.838

Multiple sequence alignment