Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ELZ47_RS02130 Genome accession   NZ_LR134002
Coordinates   426068..427135 (+) Length   355 a.a.
NCBI ID   WP_125445638.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 421068..432135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS02115 (NCTC10904_00419) amiA 421596..423572 (+) 1977 WP_125332710.1 peptide ABC transporter substrate-binding protein Regulator
  ELZ47_RS02120 (NCTC10904_00420) amiC 423637..425133 (+) 1497 WP_125332708.1 ABC transporter permease Regulator
  ELZ47_RS02125 (NCTC10904_00421) amiD 425133..426059 (+) 927 WP_072074535.1 oligopeptide ABC transporter permease OppC Regulator
  ELZ47_RS02130 (NCTC10904_00422) amiE 426068..427135 (+) 1068 WP_125445638.1 ABC transporter ATP-binding protein Regulator
  ELZ47_RS02135 (NCTC10904_00423) amiF 427146..428072 (+) 927 WP_125332704.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39451.15 Da        Isoelectric Point: 4.8708

>NTDB_id=1117802 ELZ47_RS02130 WP_125445638.1 426068..427135(+) (amiE) [Streptococcus sanguinis strain NCTC 10904]
MTKNENVILTARDIVVEFDVRDRVLTAIRGVSLDLIEGEVLAIVGESGSGKSVLTKTFTGMLEENGRVAQGTIDYRGKDL
TTLRSNKDWEPIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKSAKEAKKMAIDYMSKVGIPDAEKRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQQEYHFTTIFITHDLGVVASIADKVAVMYAGEIIE
YGTVEEIFYEPKHPYTWSLLSSLPQLADANGALYSIPGTPPSLYSPIKGDAFALRSDYAMSIDFEEAAPAFNVSDTHWAK
TWLLHEDAPKVHKPEIIENLHEKIRSKMGFNQLEA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1117802 ELZ47_RS02130 WP_125445638.1 426068..427135(+) (amiE) [Streptococcus sanguinis strain NCTC 10904]
ATGACAAAGAATGAAAATGTAATATTGACTGCTCGCGATATTGTCGTGGAATTCGATGTTCGCGATCGTGTCTTAACCGC
CATTCGCGGTGTCTCATTGGACTTGATTGAAGGCGAAGTCCTGGCTATTGTTGGTGAATCAGGTTCAGGAAAGTCTGTCT
TAACCAAGACTTTTACTGGTATGTTAGAAGAAAATGGTCGTGTAGCTCAAGGAACCATTGACTACCGTGGCAAAGATTTG
ACAACTCTTCGGAGTAACAAGGATTGGGAGCCGATTCGCGGTGCAAAAATTGCGACCATATTCCAAGATCCGATGACGAG
CTTGGATCCGATTAATACTATTGGAAGCCAGATTACAGAAGTCATTATCAAGCACCAAGGAAAATCAGCCAAAGAAGCTA
AAAAAATGGCCATTGATTATATGAGCAAGGTCGGGATTCCAGATGCGGAAAAACGTTTCGAAGAGTATCCTTTCCAATAC
TCAGGTGGTATGCGGCAGCGGATTGTTATTGCTATTGCCTTGGCTTGCCGTCCTGATATTCTTATCTGTGATGAGCCGAC
AACGGCCCTCGATGTAACGATTCAAGCGCAGATTATTGACTTGCTCAAATCCTTGCAGCAAGAATATCATTTCACAACCA
TCTTTATTACGCACGACCTTGGAGTTGTAGCTAGTATTGCAGATAAGGTTGCAGTCATGTATGCTGGTGAGATTATCGAA
TACGGGACAGTTGAAGAAATCTTCTACGAGCCAAAACATCCTTATACATGGAGTTTGCTGTCCAGCTTACCCCAGCTAGC
AGATGCAAATGGTGCCCTCTACTCGATTCCTGGTACTCCACCGTCTCTTTATTCGCCAATCAAAGGAGATGCATTTGCTT
TGCGTTCTGACTATGCTATGTCAATTGACTTTGAAGAAGCAGCGCCGGCTTTCAATGTGTCAGATACTCATTGGGCTAAG
ACTTGGTTGCTCCATGAAGATGCGCCTAAGGTTCATAAACCAGAGATTATCGAAAACCTGCATGAAAAAATTCGTTCAAA
AATGGGCTTCAATCAATTAGAAGCTTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

86.969

99.437

0.865
  amiE Streptococcus thermophilus LMG 18311

86.119

99.437

0.856
  amiE Streptococcus thermophilus LMD-9

86.119

99.437

0.856
  oppD Streptococcus mutans UA159

56.433

96.338

0.544

Multiple sequence alignment