Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KR485_RS16535 Genome accession   NZ_LR027557
Coordinates   3710970..3712466 (+) Length   498 a.a.
NCBI ID   WP_005792457.1    Uniprot ID   A0A7S7S4U3
Organism   Pseudomonas synxantha strain 10586     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3705970..3717466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KR485_RS16505 - 3706398..3707093 (+) 696 WP_216090475.1 HAD-IA family hydrolase -
  KR485_RS16510 sutA 3707288..3707620 (-) 333 WP_032878753.1 transcriptional regulator SutA -
  KR485_RS16515 - 3707723..3708148 (-) 426 WP_005792453.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KR485_RS16520 - 3708358..3709695 (-) 1338 WP_032878752.1 ammonium transporter -
  KR485_RS16525 glnK 3709730..3710068 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  KR485_RS16530 - 3710491..3710754 (+) 264 WP_005792456.1 accessory factor UbiK family protein -
  KR485_RS16535 comM 3710970..3712466 (+) 1497 WP_005792457.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KR485_RS16540 - 3712473..3713048 (-) 576 WP_032878749.1 TetR family transcriptional regulator C-terminal domain-containing protein -
  KR485_RS16545 - 3713161..3714075 (+) 915 WP_179119857.1 ABC transporter six-transmembrane domain-containing protein -
  KR485_RS16550 - 3714079..3716055 (-) 1977 WP_216090476.1 methyl-accepting chemotaxis protein -
  KR485_RS16555 - 3716233..3717153 (-) 921 WP_032878744.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53416.57 Da        Isoelectric Point: 8.1015

>NTDB_id=1115755 KR485_RS16535 WP_005792457.1 3710970..3712466(+) (comM) [Pseudomonas synxantha strain 10586]
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYRSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPNRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREVTALSPSQQA
GDTTAQASAQVAQARERQHQRQGCANAFLDLPRLREHCQLTKADESWLESACERLTLSLRAAHRLLKVARTLADLEQVEG
IARHHLAEALQYRPAAHG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1115755 KR485_RS16535 WP_005792457.1 3710970..3712466(+) (comM) [Pseudomonas synxantha strain 10586]
ATGTCCCTCGCTATCGTGCACAGCCGCGCCCAGGTCGGCGTTGAAGCCCCCGCCGTCACCGTTGAAGTGCATATGGCCAA
TGGCTTGCCATCGCTGACGCTGGTGGGCCTGCCGGAAACTGCAGTGAAGGAAAGCAAGGATCGCGTTCGCAGCGCCATTC
TCAACTCGGCGCTGCAATACCCGGCCCGGCGCATCACCCTCAATCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGC
TTTGATCTGGCGATTGCCCTGGGGATCCTGGCGGCCAGTGTGCAAGTGCCGGCCTTGATGCTTGATGACGTGGAGTGCCT
TGGTGAGTTGGCGTTATCGGGCGAGGTACGGGCGGTGAAGGGTGTGTTGCCGGCCGCGCTTGCGGCGCGCAAGGCCGGGC
GCACCGTGATAGTGCCCAGGGCCAATGCCGAGGAAGCCTGCCTGGCGTCGGGGCTCAAAGTGATTGCGGTGGACCACCTG
CTGCAAGTGGTGGCGCACCTTAATGGGCATGTGCCGATTGAGCCCTACAGGTCCGACGGCTTGCTGTACTTGAACAAGCC
TTACCCGGACCTGAGTGAAGTGCAGGGCCAACTGGCAGCCAAGCGTGCCTTGCTGATTGCGGCGGCCGGCGCACATAACC
TGCTGTTCAGCGGGCCACCCGGTACCGGCAAAACCCTGTTGGCCAGCCGCCTGCCGGGCTTGCTGCCACCGCTGAGCGAG
CAGGAGGCGCTGGAAGTGGCCGCGATCCAATCCGTGGTCAGCCTGGCCCCCCTGAGCCATTGGCCTAATCGCCCGTTCCG
CCAGCCGCACCACTCGGCATCCGGCCCGGCGCTGGTGGGTGGCGGCTCGAAGCCGCAGCCGGGGGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTGGATGAGCTGCCGGAATTTGATCGCAAGGTACTGGAGGTGCTGCGCGAGCCATTGGAGTCG
GGGCATATCGTGATCTCCCGAGCCAGGGACCGGGTGAGTTTCCCGGCACGCTTCCAATTGGTCGCGGCCATGAACCCCTG
CCCGTGCGGCTACATGGGCGAACCCAGCGGGCGTTGTCGGTGCACGCCGGAACAGATACAACGCTATCGCAACAAGCTAT
CCGGGCCGCTGCTGGACCGGATTGATTTGCACCTGACAGTCGCGCGGGAGGTCACTGCGCTGAGCCCCTCCCAACAGGCC
GGTGACACCACCGCGCAAGCGTCCGCCCAGGTGGCGCAAGCCCGTGAACGCCAGCACCAGCGCCAGGGTTGTGCCAATGC
ATTCCTCGATCTGCCACGGCTACGCGAACACTGCCAGTTGACCAAAGCCGATGAAAGCTGGCTGGAAAGCGCGTGCGAAC
GACTGACATTATCGCTGCGTGCAGCCCACCGATTGCTCAAGGTGGCTCGCACCCTGGCGGACCTTGAGCAAGTGGAAGGC
ATCGCCCGCCATCATTTGGCGGAGGCGTTGCAGTACCGACCAGCCGCTCATGGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7S4U3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.768

99.398

0.564
  comM Glaesserella parasuis strain SC1401

55.689

100

0.56
  comM Vibrio cholerae strain A1552

56.364

99.398

0.56
  comM Haemophilus influenzae Rd KW20

55

100

0.552
  comM Legionella pneumophila str. Paris

50.4

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.4

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.429

100

0.47

Multiple sequence alignment