Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD1   Type   Regulator
Locus tag   FOA32_RS07415 Genome accession   NZ_JABTYC020000010
Coordinates   53793..55139 (-) Length   448 a.a.
NCBI ID   WP_217473256.1    Uniprot ID   -
Organism   Streptococcus sinensis strain Forsyth1A     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 48793..60139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOA32_RS07390 - 50332..51594 (-) 1263 Protein_47 IS3 family transposase -
  FOA32_RS07405 - 52031..52954 (+) 924 Protein_48 IS481 family transposase -
  FOA32_RS07410 (FOA32_001480) comE 53050..53796 (-) 747 Protein_49 competence system response regulator transcription factor ComE -
  FOA32_RS07415 (FOA32_001481) comD/comD1 53793..55139 (-) 1347 WP_217473256.1 ATP-binding protein Regulator
  FOA32_RS07420 (FOA32_001482) comC 55179..55313 (-) 135 WP_148881652.1 bacteriocin Regulator
  FOA32_RS07430 (FOA32_001483) rlmH 55611..56090 (-) 480 WP_037615060.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  FOA32_RS07435 (FOA32_001484) htrA 56294..57472 (+) 1179 WP_037615063.1 S1C family serine protease Regulator
  FOA32_RS07440 (FOA32_001485) spo0J 57536..58297 (+) 762 WP_217473257.1 ParB/RepB/Spo0J family partition protein Regulator
  FOA32_RS07445 (FOA32_001486) dnaA 58510..59865 (+) 1356 WP_037615069.1 chromosomal replication initiator protein DnaA -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 53202.17 Da        Isoelectric Point: 6.1004

>NTDB_id=1112707 FOA32_RS07415 WP_217473256.1 53793..55139(-) (comD/comD1) [Streptococcus sinensis strain Forsyth1A]
MLELVLWGSVQLIEVFAIIKIYKKITNKVKSRFYFTFLCIGILIPLPLLILNFETIFVLLRYILYYSGILIQPLFFYWYF
YKKEKLPTPFALFLSFFLYLAVYTSSTFFAVIISSATGDQFVETNWGTFYIFIELISLFFMLKSIDYFEFRLRDFKDQAF
KSTINRINLFYFIDILLLNISHWLSEVKHFNSLSSMLATICFLMFMSTLFYLKAAREKYEKEEEIKQRELEQLQLQQYTD
EIVSLYNEIRGFRHDYAGMLTSFQMAINTQDIKEIEKIYQEVLVDANLKLRSDKYTYFDLNNVGDSALRSVMTETLFKAR
DNQIDLTFEVKDPVERLPIKLLDVVRIASILLNNAVEGAIESYEKMIHVTLVQLDTEIIFVVKNSRKQRKLDLEEIYEPE
FSTKGYRRGLGLNNLKEILENYEYIMLDTEINKHDFTQVLTIKRRNSL

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=1112707 FOA32_RS07415 WP_217473256.1 53793..55139(-) (comD/comD1) [Streptococcus sinensis strain Forsyth1A]
ATGTTAGAATTAGTATTATGGGGTAGTGTTCAATTAATAGAAGTTTTTGCAATTATAAAAATTTATAAAAAAATAACAAA
TAAAGTAAAATCTAGGTTTTACTTTACTTTTCTATGTATTGGAATTTTAATTCCTTTACCCTTATTGATATTAAACTTTG
AAACTATTTTTGTTTTATTAAGATATATTTTATACTATTCTGGAATATTAATTCAACCTCTTTTTTTCTATTGGTATTTT
TACAAAAAAGAAAAATTACCTACTCCCTTTGCTTTATTTCTATCCTTTTTCCTTTACCTAGCAGTGTATACTTCTTCGAC
TTTTTTTGCAGTCATTATTTCGTCTGCAACTGGAGATCAATTTGTAGAGACTAATTGGGGTACTTTTTATATTTTTATTG
AACTTATTTCCCTTTTCTTTATGTTAAAATCTATTGATTACTTTGAATTTCGACTTAGAGATTTCAAGGACCAGGCTTTT
AAAAGTACAATTAATAGGATCAATCTATTTTATTTTATAGATATCCTCCTATTAAATATTTCTCATTGGCTAAGTGAAGT
CAAACATTTTAATAGTCTCAGCAGCATGCTGGCAACTATTTGTTTTTTAATGTTTATGTCCACGCTTTTTTATCTAAAAG
CTGCTCGAGAAAAATATGAAAAAGAAGAGGAAATAAAACAAAGGGAGTTGGAGCAGCTGCAACTGCAGCAATACACTGAC
GAAATTGTTTCTCTGTATAATGAGATTCGAGGTTTTCGTCATGATTATGCAGGAATGCTGACTAGCTTTCAGATGGCTAT
CAATACTCAAGATATCAAGGAAATTGAAAAAATCTATCAAGAGGTTTTGGTTGATGCAAATTTAAAATTACGTTCGGATA
AATATACTTATTTTGATTTGAATAATGTTGGAGATTCTGCTCTGCGGAGTGTTATGACGGAAACTTTATTTAAGGCGCGT
GATAATCAAATTGATCTGACTTTTGAAGTAAAGGATCCTGTTGAGAGATTGCCTATTAAGCTGTTAGATGTTGTGAGGAT
AGCCAGTATTTTATTAAATAATGCTGTTGAGGGAGCTATCGAAAGCTATGAGAAAATGATTCATGTGACCCTAGTTCAGT
TGGATACAGAAATCATTTTTGTTGTAAAAAATTCCCGCAAGCAAAGAAAATTAGACTTAGAAGAAATTTATGAACCAGAG
TTTTCAACTAAAGGTTATAGAAGAGGTTTAGGTTTAAATAATCTGAAAGAAATTTTAGAGAATTATGAATATATCATGCT
TGACACAGAAATAAATAAGCATGATTTCACCCAAGTATTAACAATAAAAAGAAGGAATAGCCTATGA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(340-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD1 Streptococcus gordonii str. Challis substr. CH1

56.522

87.277

0.493
  comD/comD2 Streptococcus gordonii strain NCTC7865

56.218

86.161

0.484
  comD/comD1 Streptococcus pneumoniae Rx1

43.262

94.42

0.408
  comD/comD1 Streptococcus pneumoniae D39

43.262

94.42

0.408
  comD/comD1 Streptococcus pneumoniae R6

43.262

94.42

0.408
  comD/comD2 Streptococcus pneumoniae TIGR4

45.269

87.277

0.395
  comD Streptococcus mitis NCTC 12261

43.86

89.063

0.391

Multiple sequence alignment