Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   NCDO2118_RS02430 Genome accession   NZ_CP009054
Coordinates   480831..481547 (-) Length   238 a.a.
NCBI ID   WP_012897246.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis NCDO 2118     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 475831..486547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCDO2118_RS02415 (NCDO2118_0482) cdaA 477524..478402 (+) 879 WP_003131542.1 diadenylate cyclase CdaA -
  NCDO2118_RS02420 (NCDO2118_0483) - 478392..479351 (+) 960 WP_012897245.1 YbbR-like domain-containing protein -
  NCDO2118_RS02425 (NCDO2118_0484) glmM 479397..480755 (+) 1359 WP_003131539.1 phosphoglucosamine mutase -
  NCDO2118_RS02430 (NCDO2118_0485) treR 480831..481547 (-) 717 WP_012897246.1 trehalose operon repressor Regulator
  NCDO2118_RS02435 (NCDO2118_0486) - 481658..482143 (+) 486 WP_012897247.1 PTS glucose transporter subunit IIA -
  NCDO2118_RS02440 (NCDO2118_0487) - 482280..483845 (+) 1566 WP_012897248.1 PTS transporter subunit EIIC -
  NCDO2118_RS02445 (NCDO2118_0488) - 483913..486222 (+) 2310 WP_012897249.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27907.60 Da        Isoelectric Point: 6.4168

>NTDB_id=111269 NCDO2118_RS02430 WP_012897246.1 480831..481547(-) (treR) [Lactococcus lactis subsp. lactis NCDO 2118]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSVNYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAIGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDTLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=111269 NCDO2118_RS02430 WP_012897246.1 480831..481547(-) (treR) [Lactococcus lactis subsp. lactis NCDO 2118]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
AAGTGAAAATGAGCTCTCTGTTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCATGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGCTTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCATTGGGGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATACTCTAGGGCTTGATATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCCTGCGAAGATGA
CTTTAAATATCTTGACTTAAATCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTTGCCAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462

Multiple sequence alignment