Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KHN79_RS04445 Genome accession   NZ_HG992749
Coordinates   966712..966996 (+) Length   94 a.a.
NCBI ID   WP_182011116.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 961712..971996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN79_RS04435 (ACOMICROBIO_LOCUS663) - 964208..964501 (+) 294 WP_220455398.1 HU family DNA-binding protein -
  KHN79_RS04440 (ACOMICROBIO_LOCUS664) ppiD 964704..966563 (+) 1860 WP_182011096.1 peptidylprolyl isomerase -
  KHN79_RS04445 (ACOMICROBIO_LOCUS665) comEA 966712..966996 (+) 285 WP_182011116.1 helix-hairpin-helix domain-containing protein Machinery gene
  KHN79_RS04450 (ACOMICROBIO_FLGHMIGD_00897) rrtA 967091..967642 (-) 552 WP_182011097.1 rhombosortase -
  KHN79_RS04455 (ACOMICROBIO_FLGHMIGD_00898) - 967646..968266 (+) 621 WP_182011098.1 DTW domain-containing protein -
  KHN79_RS04460 (ACOMICROBIO_LOCUS666) - 968284..969618 (-) 1335 WP_182011099.1 anti-phage deoxyguanosine triphosphatase -
  KHN79_RS04465 (ACOMICROBIO_FLGHMIGD_00900) yfbR 969619..970203 (-) 585 WP_182011100.1 5'-deoxynucleotidase -
  KHN79_RS04470 (ACOMICROBIO_LOCUS667) - 970281..971495 (-) 1215 WP_182011101.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10169.82 Da        Isoelectric Point: 5.8183

>NTDB_id=1112425 KHN79_RS04445 WP_182011116.1 966712..966996(+) (comEA) [Vibrio sp. B1FLJ16]
MKWVLTLCLCMFAPLGLAADSDTDKYEGIEITVNVNTASAKEIATMLKGIGAKKAQDIVDYRTEHGPFKTVNELSNIKGI
GAATLEKNEGRILL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1112425 KHN79_RS04445 WP_182011116.1 966712..966996(+) (comEA) [Vibrio sp. B1FLJ16]
ATGAAGTGGGTTTTGACTTTGTGTTTATGTATGTTTGCACCGCTTGGCTTGGCGGCAGACTCGGACACAGATAAATATGA
AGGCATTGAAATTACAGTTAATGTGAATACTGCATCTGCAAAAGAAATCGCGACAATGCTGAAAGGTATTGGTGCAAAGA
AAGCACAGGATATAGTGGACTACCGTACCGAGCACGGTCCGTTTAAAACCGTAAATGAGCTTTCCAATATTAAAGGAATT
GGTGCGGCTACTCTGGAGAAAAATGAAGGGCGTATTCTCCTCTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

78.723

100

0.787
  comEA Vibrio campbellii strain DS40M4

67.368

100

0.681
  comEA Vibrio cholerae C6706

55.435

97.872

0.543
  comEA Vibrio cholerae strain A1552

55.435

97.872

0.543
  comEA/comE1 Glaesserella parasuis strain SC1401

37.383

100

0.426
  comE1/comEA Haemophilus influenzae Rd KW20

54.839

65.957

0.362

Multiple sequence alignment