Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   P3C55_RS06085 Genome accession   NZ_HG992342
Coordinates   1411388..1413133 (+) Length   581 a.a.
NCBI ID   WP_104613413.1    Uniprot ID   -
Organism   Xanthomonas arboricola pv. corylina strain CFBP 6600 isolate K100-1     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1406388..1418133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3C55_RS22705 - 1407007..1407245 (-) 239 Protein_1186 SymE family type I addiction module toxin -
  P3C55_RS06060 (CFBP6600_12200) coaE 1407255..1407878 (-) 624 WP_104613410.1 dephospho-CoA kinase -
  P3C55_RS06065 (CFBP6600_12210) - 1407892..1408755 (-) 864 WP_016849610.1 A24 family peptidase -
  P3C55_RS06070 (CFBP6600_12220) pilC 1408762..1410018 (-) 1257 WP_104613429.1 type II secretion system F family protein Machinery gene
  P3C55_RS06075 - 1410365..1410805 (+) 441 WP_104613411.1 pilin -
  P3C55_RS06080 - 1410949..1411356 (+) 408 WP_275544343.1 pilin -
  P3C55_RS06085 (CFBP6600_12230) pilB 1411388..1413133 (+) 1746 WP_104613413.1 type IV-A pilus assembly ATPase PilB Machinery gene
  P3C55_RS06090 (CFBP6600_12240) pilR 1413348..1414742 (-) 1395 WP_104613414.1 sigma-54 dependent transcriptional regulator Regulator
  P3C55_RS06095 (CFBP6600_12250) - 1414935..1416548 (-) 1614 WP_039512337.1 PAS domain-containing sensor histidine kinase -
  P3C55_RS06100 (CFBP6600_12260) sucC 1416780..1417949 (+) 1170 WP_016901264.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62988.08 Da        Isoelectric Point: 5.7615

>NTDB_id=1112358 P3C55_RS06085 WP_104613413.1 1411388..1413133(+) (pilB) [Xanthomonas arboricola pv. corylina strain CFBP 6600 isolate K100-1]
MNAGPATNNINLVGITGIARRLVQDGALDEVSARSAMHQAANAKVPLPQWFAEKKLVSAAQLASANAVEFGMPLMDVSVF
DASQNAVKLVSEELLQKYQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQASNAALGS
SLGDDDEGMGDLDVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVA
KAPVKLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIEKLGYEAD
QQKLFLEAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLR
QDPDIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKS
TLPEHALLAEGFTAEQIAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQSIGIRDLRQS
ALVKAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=1112358 P3C55_RS06085 WP_104613413.1 1411388..1413133(+) (pilB) [Xanthomonas arboricola pv. corylina strain CFBP 6600 isolate K100-1]
ATGAATGCTGGGCCTGCCACTAACAACATTAATCTCGTAGGTATAACCGGCATTGCCCGGCGATTGGTCCAAGACGGTGC
TCTAGACGAAGTCAGTGCTCGCTCCGCCATGCATCAGGCAGCCAACGCAAAAGTCCCTTTGCCGCAATGGTTCGCTGAAA
AAAAGTTGGTGTCGGCAGCGCAACTCGCCTCTGCCAATGCGGTTGAGTTTGGTATGCCCCTGATGGACGTTTCTGTCTTT
GATGCCAGCCAGAACGCAGTCAAGCTAGTCAGTGAGGAGTTGCTCCAGAAGTACCAGGTGCTGCCGCTGTTCAAGCGCGG
CAATCGGTTGTTCGTGGGGGTGAGCAACCCGACCCAGACTCGGGCGCTGGACGACATCAAGTTCCATACCAACCTGGTGG
TCGAGCCGATCCTGGTCGACGAGGATCAGATCCGTCGCACCTTGGAGCAATGGCAAGCCAGCAATGCGGCGCTTGGCTCT
TCGCTCGGTGACGACGATGAGGGGATGGGCGACCTGGACGTGTCGGCCGGGGACGAGGACATGGGCGCCGGCGGGGATTC
CGGGGTCGATGCCAAGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAG
CCTCCGACATCCATTTCGAGCCCTATGAAGACGACTATCGGGTGCGCTTGCGCATCGATGGGCTGCTGAAGAATGTGGCC
AAGGCACCGGTGAAGCTGAACCAGCGCATCGCGGCGCGTCTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGT
GCCGCAGGACGGGCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGCGTGAGCACTTTGCCGACGTTGT
TCGGCGAGAAGGTGGTGCTGCGTATCCTTGACGGCAGCGCGGCCAAGCTGGGAATCGAGAAGCTGGGCTACGAGGCGGAC
CAGCAGAAGCTGTTCCTGGAGGCAATCCATAAGCCGTACGGGATGGTGCTGGTGACCGGGCCGACCGGTTCGGGCAAGAC
GGTGTCGCTGTATACGGCACTGGGTATCCTCAACGACGAGACGCGCAACATCTCCACGGCCGAGGACCCGGTGGAAATCC
GTCTGCCCGGCGTGAACCAGGTGCAGCAGAACAACAAGCGCGGCATGACCTTCGCCGCGGCGCTGCGCTCGTTCCTGCGT
CAGGACCCGGACATCATCATGGTCGGCGAAATCCGCGACCTGGAGACGGCCGAGATTGCGATCAAGGCCGCGCAGACCGG
TCACATGGTGCTGTCCACGCTGCATACCAACGATGCGCCGCAGACCATCGCGCGTTTGATGAACATGGGCATCGCGCCGT
ACAACATCACCTCGTCGGTGACCCTGGTGATCGCGCAGCGTCTGGCGCGGCGCCTGTGCAACAACTGCAAGCGCAAATCG
ACCTTGCCCGAGCATGCGTTGCTGGCGGAAGGGTTCACTGCAGAGCAGATCGCTGCCGGGATCGAGCTGTACGAAGCGGT
CGGTTGCGACGAGTGCACCGAAGGCTACAAGGGCCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAGATCGGCG
CGATCGTGCTGGAAGGCGGTAACGCCATGCAGATTGCCGAGGCGGCACAGAGTATCGGCATCCGCGACCTGCGCCAGTCG
GCGTTGGTCAAGGCCGCGCACGGGGTGACCAGCCTGGCCGAGATCAACCGGGTGACGAAAGACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(52-156)

Type II/IV secretion system protein (T2SSE)

(204-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

55.81

97.762

0.546
  pilB Acinetobacter baylyi ADP1

55.458

97.762

0.542
  pilB Legionella pneumophila strain ERS1305867

52.373

97.935

0.513
  pilB Vibrio cholerae strain A1552

48.527

99.312

0.482
  pilF Neisseria gonorrhoeae MS11

48.239

97.762

0.472
  pilB Vibrio campbellii strain DS40M4

45.694

97.935

0.448
  pilB Vibrio parahaemolyticus RIMD 2210633

46.25

96.386

0.446
  pilB/pilB1 Synechocystis sp. PCC 6803

35.961

100

0.377

Multiple sequence alignment