Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   P3C55_RS06090 Genome accession   NZ_HG992342
Coordinates   1413348..1414742 (-) Length   464 a.a.
NCBI ID   WP_104613414.1    Uniprot ID   -
Organism   Xanthomonas arboricola pv. corylina strain CFBP 6600 isolate K100-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1408348..1419742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3C55_RS06070 (CFBP6600_12220) pilC 1408762..1410018 (-) 1257 WP_104613429.1 type II secretion system F family protein Machinery gene
  P3C55_RS06075 - 1410365..1410805 (+) 441 WP_104613411.1 pilin -
  P3C55_RS06080 - 1410949..1411356 (+) 408 WP_275544343.1 pilin -
  P3C55_RS06085 (CFBP6600_12230) pilB 1411388..1413133 (+) 1746 WP_104613413.1 type IV-A pilus assembly ATPase PilB Machinery gene
  P3C55_RS06090 (CFBP6600_12240) pilR 1413348..1414742 (-) 1395 WP_104613414.1 sigma-54 dependent transcriptional regulator Regulator
  P3C55_RS06095 (CFBP6600_12250) - 1414935..1416548 (-) 1614 WP_039512337.1 PAS domain-containing sensor histidine kinase -
  P3C55_RS06100 (CFBP6600_12260) sucC 1416780..1417949 (+) 1170 WP_016901264.1 ADP-forming succinate--CoA ligase subunit beta -
  P3C55_RS06105 (CFBP6600_12270) sucD 1417974..1418849 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50214.64 Da        Isoelectric Point: 6.5112

>NTDB_id=1112359 P3C55_RS06090 WP_104613414.1 1413348..1414742(-) (pilR) [Xanthomonas arboricola pv. corylina strain CFBP 6600 isolate K100-1]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGAPSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1112359 P3C55_RS06090 WP_104613414.1 1413348..1414742(-) (pilR) [Xanthomonas arboricola pv. corylina strain CFBP 6600 isolate K100-1]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCTGACGGCAACGGCATTGAACTGGTTACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCTTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAGCTGAATAACCGCGACCGCCCTGCCCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGATTCCAGTGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGAGCAAGGCGC
ACGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATCCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCACATGCCGACAAGCCAGGCCTGTTCCAGGCCGCGCACGGCGGCACGCTGTTTCTGGAC
GAGGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTGGGCGC
GCCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAGAACCTGGGCGACCTGGTCTCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCACATAGCCACGGCCGGCCGATTCCGCTGCTCACCCAGTCCGCGCTCGA
CGCGCTGGACCAGTACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTGGCCGCCACCCCCGGCAGCGCCGCC
GTCGAGCCCCGCGAAGCAGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCACTCGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment