Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMCNG_RS08520 Genome accession   NZ_AP038785
Coordinates   1888876..1890405 (-) Length   509 a.a.
NCBI ID   WP_226691999.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1654     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1883876..1895405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNG_RS08490 (THUN1654_16320) - 1884530..1885045 (+) 516 WP_226691993.1 PilN domain-containing protein -
  ACMCNG_RS08495 (THUN1654_16330) - 1885042..1885560 (+) 519 WP_226691994.1 hypothetical protein -
  ACMCNG_RS08500 (THUN1654_16340) - 1885563..1885949 (+) 387 WP_226691995.1 hypothetical protein -
  ACMCNG_RS08505 (THUN1654_16350) comE 1885958..1887346 (+) 1389 WP_226691996.1 type IV pilus secretin PilQ Machinery gene
  ACMCNG_RS08510 (THUN1654_16360) - 1887398..1888126 (+) 729 WP_226691997.1 double zinc ribbon domain-containing protein -
  ACMCNG_RS08515 (THUN1654_16370) nfuA 1888226..1888810 (+) 585 WP_226691998.1 Fe-S biogenesis protein NfuA -
  ACMCNG_RS08520 (THUN1654_16380) comM 1888876..1890405 (-) 1530 WP_226691999.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMCNG_RS08525 (THUN1654_16390) yihA 1890611..1891228 (-) 618 WP_226692000.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ACMCNG_RS08530 (THUN1654_16400) dusA 1891377..1892360 (-) 984 WP_412763346.1 tRNA dihydrouridine(20/20a) synthase DusA -
  ACMCNG_RS08535 (THUN1654_16410) - 1892363..1893745 (-) 1383 WP_226692002.1 chloride channel protein -
  ACMCNG_RS08540 (THUN1654_16420) rpsL 1894008..1894382 (+) 375 WP_005543325.1 30S ribosomal protein S12 -
  ACMCNG_RS08545 (THUN1654_16430) rpsG 1894539..1895009 (+) 471 WP_226692003.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55956.39 Da        Isoelectric Point: 9.8765

>NTDB_id=111194 ACMCNG_RS08520 WP_226691999.1 1888876..1890405(-) (comM) [Rodentibacter sp. THUN1654]
MSLSIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDGSRLKQFEFVGELALTGHLRGVHGVIPAIIAAQKSKRELIIAKQNANEASLVSEQNTYFAQTL
LDVVQFLNNQEKLPLASELTDESAVNFPRKNPLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDQEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQH
NGDRGETSTQVREKVLKVREIQLARAGKINAYLTGKEIERDCKLNEKEALFLENALNKLGLSVRAYHRILKVSRTIADLN
GEKQITQAHLAEALGYRAMDRLLQKLGNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=111194 ACMCNG_RS08520 WP_226691999.1 1888876..1890405(-) (comM) [Rodentibacter sp. THUN1654]
ATGTCTCTCTCCATTGTTTACAGCCGCGCCTCTATGGGAGTTCAAGCCCCTCTCGTAACCATTGAAGTTCATTTAAGTAA
TGGCAAACCGGGCTTTACCCTTGTCGGATTGCCGGAAAAAACCGTAAAAGAAGCCCAAGATCGTGTCCGTAGCGCATTGA
TGAATGCACAATTCAAATATCCGGCAAAACGTATTACCGTCAATCTTGCACCGGCAGATTTACCAAAAGAAGGCGGGCGT
TTTGATCTCCCTATTGCAATCGGCATTCTTGCGGCATCGGATCAACTTGACGGCTCCCGTTTAAAGCAATTTGAGTTTGT
CGGTGAACTCGCCTTAACCGGCCATTTACGTGGCGTACACGGCGTAATTCCTGCCATTATCGCTGCACAAAAATCCAAAC
GAGAGCTTATCATCGCAAAACAAAATGCCAATGAAGCCTCCTTAGTTTCCGAACAAAACACCTATTTTGCACAAACACTT
TTAGATGTGGTGCAATTTCTTAATAATCAGGAAAAATTACCCCTTGCTTCAGAATTAACGGATGAAAGTGCGGTCAATTT
TCCCCGTAAAAATCCGTTGGATTTAACGGATATTATCGGACAACAACACGCGAAACGCGCGCTCACTATTGCGGCGGCCG
GTCAACACAATTTATTATTTCTCGGTCCTCCGGGAACCGGTAAAACAATGCTTGCCAGCCGATTAACCGCACTTTTACCC
GAAATGACCGATCAAGAAGCGATTGAAACGGCTTCCGTTACAAGCCTTGTACAAAATGAACTGAATTTTCACAACTGGAA
ACAACGTCCATTTCGCGCACCACACCATAGCGCCTCTTTACCGGCATTAGTGGGCGGTGGCACGATTCCTAAACCGGGAG
AAATTTCCTTAGCACATAATGGCGTGCTTTTTTTAGACGAATTGCCGGAATTTGAACGCAAAGTGCTTGATGCCCTAAGG
CAACCGCTGGAAAGCGGTGAAATTATTATTTCACGAGCGAATGCCAAGATTCAATTTCCGGCACGTTTTCAATTAGTTGC
AGCAATGAATCCCAGCCCTACCGGACATTACACCGGCACGCACAATCGAACTTCACCACAACAAATAATGCGATATTTAA
ATCGCCTTTCAGGGCCATTCTTAGATCGTTTCGATTTATCTATTGAAGTCCCGCTATTACCACAAGGCAGCCTACAACAT
AACGGAGATCGTGGAGAAACCAGCACTCAAGTGAGAGAAAAAGTATTAAAAGTACGGGAAATTCAATTGGCAAGAGCCGG
AAAAATTAACGCTTACTTAACCGGTAAAGAAATTGAACGTGATTGTAAACTAAATGAAAAAGAAGCCCTTTTTTTAGAAA
ATGCGTTGAACAAATTAGGACTTTCCGTTCGTGCCTATCACAGAATTTTAAAAGTCTCACGAACGATCGCCGATCTCAAC
GGAGAAAAACAAATTACCCAAGCACATTTGGCGGAAGCATTAGGATATCGGGCAATGGATAGATTATTACAAAAACTGGG
GAATATGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

92.927

100

0.929
  comM Glaesserella parasuis strain SC1401

79.684

99.607

0.794
  comM Vibrio cholerae strain A1552

66.206

99.411

0.658
  comM Vibrio campbellii strain DS40M4

65.362

100

0.656
  comM Legionella pneumophila str. Paris

51.8

98.232

0.509
  comM Legionella pneumophila strain ERS1305867

51.8

98.232

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.554

100

0.477

Multiple sequence alignment