Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   HMPREF9425_RS02780 Genome accession   NZ_GL831112
Coordinates   524715..526208 (+) Length   497 a.a.
NCBI ID   WP_003096591.1    Uniprot ID   -
Organism   Streptococcus vestibularis ATCC 49124     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 519715..531208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS02760 (HMPREF9425_0575) - 519725..520561 (+) 837 WP_003094740.1 NAD kinase -
  HMPREF9425_RS02765 (HMPREF9425_0576) - 520558..521454 (+) 897 WP_003096585.1 RluA family pseudouridine synthase -
  HMPREF9425_RS02770 (HMPREF9425_0577) pta 521468..522451 (+) 984 WP_003096587.1 phosphate acetyltransferase -
  HMPREF9425_RS02775 (HMPREF9425_0578) amiA 522684..524654 (+) 1971 WP_003096589.1 peptide ABC transporter substrate-binding protein Regulator
  HMPREF9425_RS02780 (HMPREF9425_0579) amiC 524715..526208 (+) 1494 WP_003096591.1 ABC transporter permease Regulator
  HMPREF9425_RS02785 (HMPREF9425_0580) amiD 526208..527134 (+) 927 WP_003094850.1 oligopeptide ABC transporter permease OppC Regulator
  HMPREF9425_RS02790 (HMPREF9425_0581) amiE 527144..528229 (+) 1086 WP_003096593.1 ABC transporter ATP-binding protein Regulator
  HMPREF9425_RS02795 (HMPREF9425_0582) amiF 528222..529151 (+) 930 WP_003096596.1 ATP-binding cassette domain-containing protein Regulator
  HMPREF9425_RS02800 (HMPREF9425_0583) - 529202..529987 (-) 786 WP_037621376.1 hypothetical protein -
  HMPREF9425_RS02805 (HMPREF9425_0584) - 529999..530697 (-) 699 WP_003096604.1 ABC transporter ATP-binding protein -
  HMPREF9425_RS02810 (HMPREF9425_0585) - 530702..531079 (-) 378 WP_003096605.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55954.75 Da        Isoelectric Point: 9.9766

>NTDB_id=1111736 HMPREF9425_RS02780 WP_003096591.1 524715..526208(+) (amiC) [Streptococcus vestibularis ATCC 49124]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIFERMGYIDYYDTKELQEKAS
TLDKLVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGDDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNRHIFKNSMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1111736 HMPREF9425_RS02780 WP_003096591.1 524715..526208(+) (amiC) [Streptococcus vestibularis ATCC 49124]
ATGAAAAAATACATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCAAAAACAGCTGATTCTAAGG
CAAACTATGAAAATACAATCTTTGAACGTATGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCCAGC
ACACTTGATAAGTTGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTTAAGCAAAGTAAGCAGTTCTATGCGACACGTGATGTACCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACGAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACTCAAGGCCAAGGGCAAACACAAAGCTCTGAGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
AGCTACCAAGAGTCGCTATCAATACCCATCAATGGTGACAAGCTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAACACACTCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCTATTTGGATTCGTCGTTACATGATCGATTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTATCA
GAACAAGAAATTTCGAACAGGCACATTTTCAAGAATTCTATGGTTTCCTTGGTTTCAGGAATTCCAGCATCTATTGTTGG
GGTTATCACAGGGGCTACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTTGTTGGTCTGGTATTTATTTTCACAGCCCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

97.787

100

0.978
  amiC Streptococcus thermophilus LMG 18311

96.781

100

0.968
  amiC Streptococcus thermophilus LMD-9

96.378

100

0.964

Multiple sequence alignment