Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   HMPREF9425_RS02795 Genome accession   NZ_GL831112
Coordinates   528222..529151 (+) Length   309 a.a.
NCBI ID   WP_003096596.1    Uniprot ID   -
Organism   Streptococcus vestibularis ATCC 49124     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 523222..534151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS02780 (HMPREF9425_0579) amiC 524715..526208 (+) 1494 WP_003096591.1 ABC transporter permease Regulator
  HMPREF9425_RS02785 (HMPREF9425_0580) amiD 526208..527134 (+) 927 WP_003094850.1 oligopeptide ABC transporter permease OppC Regulator
  HMPREF9425_RS02790 (HMPREF9425_0581) amiE 527144..528229 (+) 1086 WP_003096593.1 ABC transporter ATP-binding protein Regulator
  HMPREF9425_RS02795 (HMPREF9425_0582) amiF 528222..529151 (+) 930 WP_003096596.1 ATP-binding cassette domain-containing protein Regulator
  HMPREF9425_RS02800 (HMPREF9425_0583) - 529202..529987 (-) 786 WP_037621376.1 hypothetical protein -
  HMPREF9425_RS02805 (HMPREF9425_0584) - 529999..530697 (-) 699 WP_003096604.1 ABC transporter ATP-binding protein -
  HMPREF9425_RS02810 (HMPREF9425_0585) - 530702..531079 (-) 378 WP_003096605.1 GntR family transcriptional regulator -
  HMPREF9425_RS02815 (HMPREF9425_0586) - 531261..532055 (+) 795 WP_003096606.1 Cof-type HAD-IIB family hydrolase -
  HMPREF9425_RS02820 (HMPREF9425_0587) - 532048..532866 (+) 819 WP_003096607.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35039.17 Da        Isoelectric Point: 7.0426

>NTDB_id=1111739 HMPREF9425_RS02795 WP_003096596.1 528222..529151(+) (amiF) [Streptococcus vestibularis ATCC 49124]
MPKKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSNS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKKEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1111739 HMPREF9425_RS02795 WP_003096596.1 528222..529151(+) (amiF) [Streptococcus vestibularis ATCC 49124]
ATGCCTAAGAAGTTAGTTGAGGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACCACAATCGGTCGTG
CCATTATTGGTTTAAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGACACTTATCTAACTCT
GAGAAAAACGACCTTATCCGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTTGA
TTATATCTTGTCTGAGGGTTTGCATAACTTCCATCTCTATAAAGATGAGGAAGATCGTAAAGCTAAAATCAAGGAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCCTTGGTCATGCAGCCTGACTTGGTTATCGCTGACGAACCAATCTCAGCCCTTGACGTGTCAGTCCGTGC
CCAAGTCCTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTATCTCTTTATCGCTCACGACTTATCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATTGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGTCCAGGTCACTTCGTTT
GGGGTAACAAGAAAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

98.706

100

0.987
  amiF Streptococcus thermophilus LMG 18311

97.735

100

0.977
  amiF Streptococcus thermophilus LMD-9

97.411

100

0.974

Multiple sequence alignment