Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   HMPREF9425_RS02775 Genome accession   NZ_GL831112
Coordinates   522684..524654 (+) Length   656 a.a.
NCBI ID   WP_003096589.1    Uniprot ID   -
Organism   Streptococcus vestibularis ATCC 49124     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 517684..529654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS02750 (HMPREF9425_0573) - 518408..518983 (-) 576 WP_003094309.1 CYTH domain-containing protein -
  HMPREF9425_RS02755 (HMPREF9425_0574) - 519079..519750 (+) 672 WP_003096583.1 GTP pyrophosphokinase -
  HMPREF9425_RS02760 (HMPREF9425_0575) - 519725..520561 (+) 837 WP_003094740.1 NAD kinase -
  HMPREF9425_RS02765 (HMPREF9425_0576) - 520558..521454 (+) 897 WP_003096585.1 RluA family pseudouridine synthase -
  HMPREF9425_RS02770 (HMPREF9425_0577) pta 521468..522451 (+) 984 WP_003096587.1 phosphate acetyltransferase -
  HMPREF9425_RS02775 (HMPREF9425_0578) amiA 522684..524654 (+) 1971 WP_003096589.1 peptide ABC transporter substrate-binding protein Regulator
  HMPREF9425_RS02780 (HMPREF9425_0579) amiC 524715..526208 (+) 1494 WP_003096591.1 ABC transporter permease Regulator
  HMPREF9425_RS02785 (HMPREF9425_0580) amiD 526208..527134 (+) 927 WP_003094850.1 oligopeptide ABC transporter permease OppC Regulator
  HMPREF9425_RS02790 (HMPREF9425_0581) amiE 527144..528229 (+) 1086 WP_003096593.1 ABC transporter ATP-binding protein Regulator
  HMPREF9425_RS02795 (HMPREF9425_0582) amiF 528222..529151 (+) 930 WP_003096596.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72098.98 Da        Isoelectric Point: 5.0959

>NTDB_id=1111735 HMPREF9425_RS02775 WP_003096589.1 522684..524654(+) (amiA) [Streptococcus vestibularis ATCC 49124]
MKKSKWLALAGAAVLSVGILAACSSKSSTSGTTYGYVYSSDPETLDYITSNTGPTTTAVTNGVDGLMETDKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADSKAGALYLVQDSIAGLSDYLSGANKDFSKVGVK
AIDDHTLQYTLKRPEPYWNSKTTYGLLFPVNADFLKTKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDAIKLTYDDGSDPESLERSFTDGAYSIARVYPMSSNYASVEKKYKDNIFYTAAGASTSAMSVNIDRQSYKYTAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTVYQSQVNGKDGAAKAIRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
ADGQDGLYNAEKAKTEFSKAKEALQGEGVQFPIHLDLPVDQSSKLNVSQAQSLKQTIEKSLGSDNVVIDINQLSSDDMQN
ATLNAPNAAAEDWDISNGVVWSPDYQDPSTYLNIFKTTSNENTKTFMGYDNPNNAAAAQVGLKDYDALLDSADSETTDLN
VRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVVSRLTPFTGSYTQVGDKSSGDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1111735 HMPREF9425_RS02775 WP_003096589.1 522684..524654(+) (amiA) [Streptococcus vestibularis ATCC 49124]
ATGAAAAAAAGTAAATGGTTAGCCTTAGCAGGCGCTGCCGTCCTTAGTGTTGGTATTTTGGCGGCTTGTTCATCTAAGTC
TAGTACTAGTGGTACTACTTATGGTTACGTTTACAGTTCAGATCCTGAAACTTTGGATTATATTACCTCAAATACAGGAC
CTACAACAACCGCTGTGACAAATGGTGTTGATGGTCTTATGGAAACAGATAAATATGGTAATCTTGTACCTTCAGTGGCT
GAAGATTGGTCTGTCTCTCAAGATGGTCTAACCTACACTTATAAAATCCGTAAAGGGGTTAAATGGTATACCTCTGATGG
TGAAGAGTACGCTGATGTTACAGCCAAGGACTTTGTAACTGGTCTTAAGCATGCGGCAGACTCAAAAGCTGGTGCTCTCT
ATTTGGTTCAAGATTCTATTGCTGGTTTGTCCGACTACCTTTCAGGTGCCAATAAAGATTTCTCAAAGGTTGGTGTTAAG
GCAATTGATGACCATACCTTGCAATATACACTTAAACGACCAGAGCCATACTGGAACTCTAAGACAACTTATGGTTTGCT
TTTCCCAGTCAATGCAGACTTCCTTAAGACTAAAGGAAAAGATTTCGGTAAGTCAACAGACCCAACCTCTATCCTATACA
ATGGTCCATTCCTTCTCAAATCTTTGACAGCTAAATCATCAATCGAGTTGACTAAGAACGAAAACTACTGGGATAAGAAG
AACGTTCACTTTGATGCTATCAAATTGACCTATGATGATGGTTCTGATCCAGAATCTTTGGAACGTAGTTTCACTGATGG
TGCTTATAGTATTGCTCGTGTCTACCCAATGAGCTCTAACTATGCATCTGTCGAAAAGAAATATAAAGATAATATCTTCT
ATACTGCAGCAGGTGCGTCAACATCAGCCATGAGTGTCAATATTGACCGTCAAAGTTACAAATACACTGCTAAAAAGACT
GATGCTGAAAAGACTTCAACGAAAAAAGCTCTTTTGAATAAAGACTTCCGTCAATCAATTAACTTTGCTATTGACCGTAC
GGTATATCAATCACAAGTCAACGGTAAGGATGGAGCAGCTAAAGCTATTCGAAATCTCTTTGTTCCTTCTGACTTCGTTA
GTGCAGGAGATAAGACCTTTGGAGATCTTGTTACTGAAAAGATGAGTTCATATGGTGATGAGTGGTCAGGCGTCAACTTT
GCTGATGGTCAAGATGGTCTCTACAATGCAGAAAAAGCCAAAACTGAGTTTAGTAAGGCTAAAGAAGCTCTCCAAGGAGA
AGGTGTTCAATTCCCAATCCACTTGGACCTTCCAGTTGACCAAAGTTCTAAACTTAATGTTTCTCAAGCGCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGAAGTGACAATGTGGTGATTGATATCAACCAATTGTCATCTGATGATATGCAAAAT
GCAACCCTTAATGCGCCAAATGCGGCTGCAGAAGATTGGGATATTTCAAATGGTGTTGTTTGGAGTCCAGACTATCAAGA
CCCATCAACTTATCTTAATATCTTTAAGACAACATCAAATGAAAACACTAAGACCTTCATGGGATATGATAACCCAAATA
ATGCGGCAGCAGCCCAAGTAGGACTTAAAGATTATGATGCCTTGCTTGACTCAGCAGATTCTGAAACAACAGATCTCAAT
GTACGTTATGATCGTTATGCTCAAGCTCAAGCTTGGTTAGAAGATAGTTCACTTGTCATTCCTTTGACGGTTGGTAACGG
TGCAGCTCCAGTTGTCTCACGTTTGACACCATTTACAGGTTCATATACTCAAGTGGGTGATAAGAGTTCAGGTGACTACT
TCAAATATGTTAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

91.463

100

0.915
  amiA3 Streptococcus thermophilus LMD-9

87.671

100

0.878
  amiA3 Streptococcus thermophilus LMG 18311

87.519

100

0.877

Multiple sequence alignment