Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ACNR93_RS04590 Genome accession   NZ_CP184736
Coordinates   914050..914892 (-) Length   280 a.a.
NCBI ID   WP_420544043.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 909050..919892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS04575 (ACNR93_04575) - 910179..910901 (-) 723 WP_420544042.1 DUF3307 domain-containing protein -
  ACNR93_RS04580 (ACNR93_04580) - 910901..911566 (-) 666 WP_074628681.1 SatD family protein -
  ACNR93_RS04585 (ACNR93_04585) topA 911707..913845 (-) 2139 WP_024344084.1 type I DNA topoisomerase -
  ACNR93_RS04590 (ACNR93_04590) dprA 914050..914892 (-) 843 WP_420544043.1 DNA-processing protein DprA Machinery gene
  ACNR93_RS04595 (ACNR93_04595) - 914963..915514 (-) 552 WP_024344082.1 sugar O-acetyltransferase -
  ACNR93_RS04600 (ACNR93_04600) - 915514..916293 (-) 780 WP_134775252.1 ribonuclease HII -
  ACNR93_RS04605 (ACNR93_04605) ylqF 916280..917134 (-) 855 WP_033152632.1 ribosome biogenesis GTPase YlqF -
  ACNR93_RS04610 (ACNR93_04610) - 917349..917756 (+) 408 WP_024344079.1 DUF4231 domain-containing protein -
  ACNR93_RS04615 (ACNR93_04615) - 917964..918287 (-) 324 WP_420544044.1 hypothetical protein -

Sequence


Protein


Download         Length: 280 a.a.        Molecular weight: 30861.78 Da        Isoelectric Point: 8.4541

>NTDB_id=1110947 ACNR93_RS04590 WP_420544043.1 914050..914892(-) (dprA) [Streptococcus equinus strain NM-2-29]
MNNFELFKLKQAGLTNLNILALLDYQSKQEKSLSLRDMAVVSKCKNPILFMEKYKSLDSKSLRQIFNQYPSISILDDEYP
IELKNCYNPPVLLFYQGNVDLLKRPKMAVVGARTASQTGTKSVQKIVSELGNQFVIVSGLARGIDTSAHISALKNGGATI
AVIGCGLDVHYPKENKLLQEYLGKNHLILSEYAVGEAPLKFHFPERNRIIAGLSQGVIVAEAKMRSGSLITCERALEEGR
DVFAIPGNILDGKSDGCHHLIKEGAKCITSGMDVLSEYQL

Nucleotide


Download         Length: 843 bp        

>NTDB_id=1110947 ACNR93_RS04590 WP_420544043.1 914050..914892(-) (dprA) [Streptococcus equinus strain NM-2-29]
ATGAACAATTTTGAATTATTTAAATTAAAACAAGCAGGACTGACTAATCTTAATATTCTAGCTCTTTTGGATTATCAGAG
TAAACAAGAAAAATCTTTGTCCCTGAGAGATATGGCTGTAGTTTCAAAGTGTAAGAATCCAATTCTTTTCATGGAAAAAT
ACAAATCTCTTGATAGTAAATCATTGCGCCAAATTTTTAATCAGTATCCTAGTATTTCAATACTAGACGATGAATATCCA
ATAGAATTGAAGAATTGCTATAATCCGCCTGTTTTGCTCTTTTACCAAGGCAACGTAGATTTGCTTAAACGTCCGAAAAT
GGCAGTAGTAGGAGCGAGGACAGCCTCTCAAACAGGAACAAAATCTGTTCAAAAGATTGTTAGTGAACTCGGAAATCAGT
TTGTCATTGTTAGCGGGTTGGCGCGTGGAATTGACACAAGTGCTCACATTTCAGCGTTAAAAAATGGCGGAGCAACTATA
GCTGTTATCGGCTGTGGCTTAGACGTTCATTACCCTAAAGAGAACAAGCTATTGCAAGAATATCTAGGTAAAAATCACCT
AATTCTAAGTGAGTATGCAGTAGGAGAGGCTCCACTAAAATTCCACTTTCCAGAACGCAATCGCATCATTGCGGGATTGT
CTCAAGGTGTTATTGTAGCAGAAGCAAAAATGCGTTCAGGTAGTTTAATTACTTGCGAGAGAGCATTGGAAGAAGGACGA
GATGTTTTTGCAATTCCAGGAAATATCTTGGATGGAAAATCCGACGGTTGCCATCACCTGATAAAGGAAGGAGCAAAATG
CATTACATCAGGCATGGATGTCCTCTCAGAATACCAATTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

73.214

100

0.732

  dprA/cilB/dalA Streptococcus mitis NCTC 12261

64.286

100

0.643

  dprA/cilB/dalA Streptococcus pneumoniae Rx1

64.286

100

0.643

  dprA/cilB/dalA Streptococcus pneumoniae D39

64.286

100

0.643

  dprA/cilB/dalA Streptococcus pneumoniae R6

64.286

100

0.643

  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

64.286

100

0.643

  dprA/cilB/dalA Streptococcus mitis SK321

64.286

100

0.643

  dprA Lactococcus lactis subsp. cremoris KW2

61.511

99.286

0.611

  dprA Bacillus subtilis subsp. subtilis str. 168

40.892

96.071

0.393


Multiple sequence alignment