Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACKTT9_RS38285 Genome accession   NZ_AP038372
Coordinates   8714895..8715374 (-) Length   159 a.a.
NCBI ID   WP_407870059.1    Uniprot ID   -
Organism   Paenibacillus sp. P36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8709895..8720374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTT9_RS38260 (PAENIP36_76020) rplI 8710758..8711207 (-) 450 WP_127454045.1 50S ribosomal protein L9 -
  ACKTT9_RS38265 (PAENIP36_76030) - 8711204..8713168 (-) 1965 WP_407870058.1 DHH family phosphoesterase -
  ACKTT9_RS38270 (PAENIP36_76040) - 8713187..8714101 (-) 915 WP_127454049.1 DUF2232 domain-containing protein -
  ACKTT9_RS38275 (PAENIP36_76050) - 8714108..8714419 (-) 312 WP_127454050.1 MazG-like family protein -
  ACKTT9_RS38280 (PAENIP36_76060) rpsR 8714584..8714871 (-) 288 WP_029196139.1 30S ribosomal protein S18 -
  ACKTT9_RS38285 (PAENIP36_76070) ssbA 8714895..8715374 (-) 480 WP_407870059.1 single-stranded DNA-binding protein Machinery gene
  ACKTT9_RS38290 (PAENIP36_76080) rpsF 8715410..8715697 (-) 288 WP_127454054.1 30S ribosomal protein S6 -
  ACKTT9_RS38295 (PAENIP36_76090) - 8715930..8716112 (+) 183 WP_127454055.1 YjzC family protein -
  ACKTT9_RS38300 (PAENIP36_76100) - 8716129..8716401 (+) 273 WP_157326143.1 hypothetical protein -
  ACKTT9_RS38305 (PAENIP36_76110) - 8716465..8717160 (-) 696 WP_127454059.1 response regulator transcription factor -
  ACKTT9_RS38310 (PAENIP36_76120) - 8717178..8718605 (-) 1428 WP_407870060.1 sensor histidine kinase -
  ACKTT9_RS38315 (PAENIP36_76130) - 8718618..8719370 (-) 753 WP_157326146.1 ABC transporter permease -
  ACKTT9_RS38320 (PAENIP36_76140) - 8719357..8720082 (-) 726 WP_315954345.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17416.17 Da        Isoelectric Point: 4.8282

>NTDB_id=111046 ACKTT9_RS38285 WP_407870059.1 8714895..8715374(-) (ssbA) [Paenibacillus sp. P36]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSGGSKEREADFINIVTWRQLAETCANYLRKGRLTAVEGRIQV
RNYDNNEGKRVYVTEVIADNVRFLESSNGAGNREDGGSNANASYGSGGSGNRGGGSREQQDPFIDDGKPIDISDDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=111046 ACKTT9_RS38285 WP_407870059.1 8714895..8715374(-) (ssbA) [Paenibacillus sp. P36]
ATGTTGAACCGTGTCATTCTTATCGGTAGATTGACCAGAGATCCAGAACTTCGTTATACGCCAGCCGGCGTTGCGGTTAC
ACAGTTTACTCTCGCAGTAGACCGTCCTTTCACAAGCGGAGGTTCGAAAGAACGCGAAGCGGACTTTATCAATATCGTCA
CGTGGAGGCAGCTTGCCGAAACATGCGCGAACTATTTGCGTAAAGGTCGTTTGACAGCAGTGGAAGGCCGAATTCAGGTA
CGTAATTACGACAACAATGAGGGCAAGAGAGTTTACGTGACCGAAGTGATTGCCGATAATGTACGCTTCCTTGAATCCAG
TAACGGTGCCGGAAATCGTGAAGACGGTGGATCGAACGCAAACGCTAGCTACGGCAGCGGAGGCAGTGGCAATCGTGGCG
GTGGGTCACGCGAGCAGCAAGATCCTTTCATCGATGACGGAAAACCGATCGACATTTCCGATGATGACTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.647

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

52.047

100

0.56
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.038

0.377
  ssb Glaesserella parasuis strain SC1401

33.333

100

0.371
  ssb Neisseria gonorrhoeae MS11

32.955

100

0.365
  ssb Neisseria meningitidis MC58

33.721

100

0.365

Multiple sequence alignment