Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/nlmT   Type   Regulator
Locus tag   DP15_RS07085 Genome accession   NZ_CP008926
Coordinates   1394677..1396830 (-) Length   717 a.a.
NCBI ID   WP_038432843.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain ATCC 19615     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context


Location: 1389677..1401830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP15_RS07070 (DP15_1449) comE/blpR 1390869..1391618 (+) 750 WP_002992578.1 response regulator transcription factor Regulator
  DP15_RS07075 (DP15_1450) comD/blpH 1391996..1392952 (+) 957 WP_046166194.1 sensor histidine kinase Regulator
  DP15_RS09650 (DP15_1451) - 1393100..1393225 (-) 126 WP_011017462.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  DP15_RS07080 (DP15_1452) - 1393302..1394666 (-) 1365 WP_014635340.1 bacteriocin secretion accessory protein -
  DP15_RS07085 (DP15_1453) comA/nlmT 1394677..1396830 (-) 2154 WP_038432843.1 peptide cleavage/export ABC transporter Regulator
  DP15_RS09655 - 1397282..1397968 (+) 687 Protein_1355 transposase -
  DP15_RS07100 (DP15_1456) - 1398156..1398401 (+) 246 WP_002994504.1 Blp family class II bacteriocin -
  DP15_RS07105 (DP15_1457) - 1398416..1398598 (+) 183 WP_002987564.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  DP15_RS07110 (DP15_1459) - 1398789..1399475 (-) 687 Protein_1358 transposase -
  DP15_RS07115 (DP15_1460) - 1399793..1400020 (+) 228 WP_012560514.1 Blp family class II bacteriocin -
  DP15_RS07120 (DP15_1461) - 1400033..1400233 (+) 201 WP_003060803.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  DP15_RS10205 - 1400594..1400722 (+) 129 WP_002985724.1 hypothetical protein -
  DP15_RS07130 (DP15_1462) - 1400772..1401053 (+) 282 WP_011054252.1 hypothetical protein -
  DP15_RS07135 (DP15_1463) - 1401247..1401648 (+) 402 WP_032467019.1 hypothetical protein -

Sequence


Protein


Download         Length: 717 a.a.        Molecular weight: 80573.48 Da        Isoelectric Point: 7.0109

>NTDB_id=110989 DP15_RS07085 WP_038432843.1 1394677..1396830(-) (comA/nlmT) [Streptococcus pyogenes strain ATCC 19615]
MISYRKTFVAQIDARDCGVTALASIAKYYGSDYSLAHLRELAKTNKEGTTALGIVKAAKLMGFETRAIQADMTLFDIEDV
PYPFIVHVNKEGKFQHYYVVYQNKKNYLIIGDPDPTVKVTKMTKERFTSEWTGVAIFLAPEPSYKPHKDKKNGLINFLPL
IFKQRSLIFYIILASLLVTLINIVGSYYLQGILDDYIPNQLKSTLGIISIGLIITYILQQMMSFSRDYLLTVLSQRLSID
VILSYIRHIFELPMSFFATRRTGEIISRFTDANAIIDALASTILSLFLDVSILTIVGTVLLVQNTNLFLLSLVSVPLYIV
IIFIFMHPFEKMNNDVMQSNSMVSSAIIEDINGIETIKSLTSEENRYQKIDSEFVDYLDKSFKLSKYSILQSSLKQGAQL
ILNVIVLWFGAKLVMGGKISVGQLITFNTLLSYFTNPLENIINLQTKLQSAKVANNRLNEVYLVDSEFQEAGTLVNQELL
HGDIQFEELSYKYGFGRDTLSNINLTIKQGDKVSLVGISGSGKTTLAKMIVNFFEPYNGRITINHNDLKMIDKKSLRQHI
NYLPQQAYIFNGSILENLTLGANDCTSHEDILRACEVAEIRQDIEQMPMGYQTELSDGAGLSGGQKQRIALARALLTKAP
VLILDEATSGLDVLTEKRVIDNLLAMTDKTIIFVAHRLSISARTNQVIVLDEGKIIETGSHQELMTKQGFYHHLFSG

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=110989 DP15_RS07085 WP_038432843.1 1394677..1396830(-) (comA/nlmT) [Streptococcus pyogenes strain ATCC 19615]
ATGATATCCTATCGAAAAACATTTGTTGCTCAGATTGATGCTAGAGACTGTGGTGTGACTGCTCTTGCTTCCATCGCTAA
ATATTACGGTTCAGACTACTCTTTAGCTCATTTAAGAGAGTTAGCTAAAACAAATAAAGAGGGAACAACAGCGCTTGGCA
TCGTCAAAGCTGCCAAATTAATGGGGTTTGAAACAAGAGCTATTCAAGCAGACATGACCCTCTTTGATATAGAAGATGTC
CCTTATCCTTTTATTGTTCATGTTAATAAAGAAGGTAAATTCCAACACTACTATGTCGTCTATCAAAACAAAAAAAATTA
TCTGATAATCGGCGACCCTGACCCGACAGTAAAAGTCACTAAGATGACAAAGGAGCGATTTACTTCTGAATGGACGGGTG
TCGCTATTTTTCTAGCACCCGAGCCCAGCTACAAGCCTCATAAGGACAAAAAGAACGGTCTAATAAACTTTTTACCTCTT
ATTTTTAAACAGCGATCTCTGATTTTCTATATCATATTAGCTAGCCTACTCGTTACTCTGATTAATATTGTAGGTTCTTA
TTACCTACAAGGTATATTAGATGACTATATTCCAAATCAACTGAAATCAACACTCGGCATTATTTCAATTGGTCTTATCA
TTACCTATATCCTCCAACAGATGATGAGTTTTTCGCGAGATTATCTCCTGACTGTACTGAGTCAGCGATTAAGCATTGAC
GTCATTTTATCTTACATTCGCCATATTTTTGAATTACCCATGTCTTTTTTTGCAACTCGCAGAACAGGAGAAATCATTTC
ACGGTTTACAGATGCTAATGCTATTATTGATGCACTCGCTTCTACTATTTTGTCTCTTTTTCTTGATGTCAGTATTTTAA
CTATCGTAGGGACAGTCCTGTTAGTGCAAAATACCAATCTTTTTCTTCTATCTCTGGTTTCAGTCCCTCTATATATTGTT
ATTATCTTTATATTTATGCACCCATTTGAAAAGATGAATAATGATGTCATGCAGAGTAACTCTATGGTTAGCTCAGCCAT
TATCGAAGATATCAATGGCATTGAAACTATTAAATCACTGACCAGTGAAGAAAATCGTTATCAGAAAATTGATAGTGAAT
TTGTGGACTATCTGGATAAATCTTTCAAGTTAAGTAAGTACTCTATTTTACAAAGCAGTCTCAAACAAGGGGCGCAACTA
ATCCTTAACGTGATAGTCTTATGGTTTGGGGCCAAATTAGTTATGGGAGGAAAAATTTCTGTTGGTCAGTTGATTACGTT
TAATACTCTCTTATCTTATTTTACCAATCCTTTAGAAAATATCATTAATCTTCAAACCAAACTTCAATCAGCCAAGGTAG
CTAATAATCGTCTCAATGAAGTTTACCTAGTCGATTCTGAATTTCAAGAGGCTGGGACATTAGTCAATCAAGAATTATTA
CACGGAGACATTCAATTTGAAGAGTTATCCTATAAATATGGCTTTGGACGCGATACTCTATCAAATATTAATCTCACTAT
TAAGCAAGGGGACAAAGTTAGCCTTGTTGGTATTAGTGGATCTGGTAAAACGACTCTAGCTAAAATGATTGTTAATTTTT
TTGAGCCTTATAACGGCCGAATTACCATTAATCATAATGACTTAAAAATGATTGATAAAAAAAGTCTTCGCCAACATATT
AATTATCTCCCCCAACAAGCCTATATTTTTAATGGTTCTATTTTAGAAAATTTAACCTTAGGTGCTAATGACTGTACTAG
TCATGAAGATATTCTAAGAGCTTGTGAGGTTGCAGAAATTCGACAAGATATTGAACAAATGCCTATGGGCTATCAAACAG
AGCTTTCTGATGGTGCCGGACTCTCAGGAGGCCAAAAGCAACGAATTGCGCTTGCCAGAGCTCTCCTAACCAAGGCGCCT
GTGCTTATTCTAGATGAGGCTACAAGCGGTCTTGACGTACTAACTGAAAAGAGGGTTATTGATAATCTTTTGGCTATGAC
GGATAAAACTATTATTTTCGTAGCTCATCGTCTCAGCATTTCAGCGCGGACCAATCAAGTCATTGTGCTTGATGAGGGCA
AAATTATTGAAACAGGATCTCATCAAGAATTAATGACTAAACAAGGTTTCTATCATCATTTATTTAGTGGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

72.867

99.721

0.727

  comA Streptococcus mitis NCTC 12261

67.511

99.163

0.669

  comA Streptococcus mitis SK321

67.089

99.163

0.665

  comA Streptococcus pneumoniae Rx1

67.089

99.163

0.665

  comA Streptococcus pneumoniae D39

67.089

99.163

0.665

  comA Streptococcus pneumoniae R6

67.089

99.163

0.665

  comA Streptococcus pneumoniae TIGR4

66.807

99.163

0.662

  comA Streptococcus gordonii str. Challis substr. CH1

66.014

99.721

0.658


Multiple sequence alignment