Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACOCJD_RS14130 | Genome accession | NZ_CP184567 |
| Coordinates | 2830683..2831153 (+) | Length | 156 a.a. |
| NCBI ID | WP_017466775.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain CBTW2018008 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2805953..2837416 | 2830683..2831153 | within | 0 |
Gene organization within MGE regions
Location: 2805953..2837416
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOCJD_RS13975 (ACOCJD_13975) | - | 2805953..2806579 (-) | 627 | WP_000522384.1 | nitroreductase family protein | - |
| ACOCJD_RS13980 (ACOCJD_13980) | - | 2806776..2808008 (+) | 1233 | WP_183137443.1 | SdrH family protein | - |
| ACOCJD_RS13985 (ACOCJD_13985) | mroQ | 2808033..2808776 (-) | 744 | WP_000197638.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| ACOCJD_RS13990 (ACOCJD_13990) | groES | 2808951..2809235 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| ACOCJD_RS13995 (ACOCJD_13995) | groL | 2809311..2810927 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| ACOCJD_RS14000 (ACOCJD_14000) | - | 2811468..2811647 (+) | 180 | WP_000201398.1 | hypothetical protein | - |
| ACOCJD_RS14005 (ACOCJD_14005) | - | 2811644..2812270 (+) | 627 | WP_000216896.1 | hypothetical protein | - |
| ACOCJD_RS14010 (ACOCJD_14010) | - | 2812809..2814116 (-) | 1308 | WP_001045074.1 | TrkH family potassium uptake protein | - |
| ACOCJD_RS14015 (ACOCJD_14015) | - | 2814499..2815722 (-) | 1224 | WP_000206618.1 | ArgE/DapE family deacylase | - |
| ACOCJD_RS14020 (ACOCJD_14020) | - | 2816154..2817209 (+) | 1056 | WP_000791397.1 | leukocidin family pore-forming toxin | - |
| ACOCJD_RS14025 (ACOCJD_14025) | - | 2817231..2818247 (+) | 1017 | WP_000595612.1 | leukocidin/hemolysin toxin family protein | - |
| ACOCJD_RS14030 (ACOCJD_14030) | sph | 2818509..2819333 (-) | 825 | Protein_2723 | sphingomyelin phosphodiesterase | - |
| ACOCJD_RS14035 (ACOCJD_14035) | - | 2819390..2820427 (-) | 1038 | WP_000857191.1 | tyrosine-type recombinase/integrase | - |
| ACOCJD_RS14040 (ACOCJD_14040) | - | 2820486..2820950 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| ACOCJD_RS14045 (ACOCJD_14045) | - | 2821050..2821232 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| ACOCJD_RS14050 (ACOCJD_14050) | - | 2821277..2822134 (-) | 858 | WP_000804507.1 | HIRAN domain-containing protein | - |
| ACOCJD_RS14055 (ACOCJD_14055) | - | 2822146..2822862 (-) | 717 | WP_001083967.1 | LexA family transcriptional regulator | - |
| ACOCJD_RS14060 (ACOCJD_14060) | - | 2823026..2823268 (+) | 243 | WP_000639927.1 | DUF739 family protein | - |
| ACOCJD_RS14065 (ACOCJD_14065) | - | 2823282..2823542 (+) | 261 | Protein_2730 | transcriptional regulator | - |
| ACOCJD_RS14070 (ACOCJD_14070) | - | 2823566..2824105 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| ACOCJD_RS14075 (ACOCJD_14075) | - | 2824162..2824917 (+) | 756 | WP_001148341.1 | phage antirepressor KilAC domain-containing protein | - |
| ACOCJD_RS14080 (ACOCJD_14080) | - | 2824933..2825130 (+) | 198 | WP_001148861.1 | hypothetical protein | - |
| ACOCJD_RS14085 (ACOCJD_14085) | - | 2825161..2825301 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| ACOCJD_RS14090 (ACOCJD_14090) | - | 2825316..2825948 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| ACOCJD_RS14095 (ACOCJD_14095) | - | 2826007..2826327 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| ACOCJD_RS14100 (ACOCJD_14100) | - | 2826324..2826485 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| ACOCJD_RS14105 (ACOCJD_14105) | - | 2826578..2826838 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| ACOCJD_RS14110 (ACOCJD_14110) | - | 2826847..2827110 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| ACOCJD_RS14115 (ACOCJD_14115) | - | 2827119..2829062 (+) | 1944 | WP_103146213.1 | AAA family ATPase | - |
| ACOCJD_RS14120 (ACOCJD_14120) | - | 2829064..2829984 (+) | 921 | WP_103146214.1 | recombinase RecT | - |
| ACOCJD_RS14125 (ACOCJD_14125) | - | 2830065..2830682 (+) | 618 | WP_224211742.1 | MBL fold metallo-hydrolase | - |
| ACOCJD_RS14130 (ACOCJD_14130) | ssbA | 2830683..2831153 (+) | 471 | WP_017466775.1 | single-stranded DNA-binding protein | Machinery gene |
| ACOCJD_RS14135 (ACOCJD_14135) | - | 2831183..2832067 (+) | 885 | WP_103146215.1 | DnaD domain protein | - |
| ACOCJD_RS14140 (ACOCJD_14140) | - | 2832074..2832292 (+) | 219 | WP_053819389.1 | hypothetical protein | - |
| ACOCJD_RS14145 (ACOCJD_14145) | - | 2832301..2832705 (+) | 405 | WP_103146216.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ACOCJD_RS14150 (ACOCJD_14150) | - | 2832718..2833086 (+) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| ACOCJD_RS14155 (ACOCJD_14155) | - | 2833090..2833332 (+) | 243 | WP_000131379.1 | phi PVL orf 51-like protein | - |
| ACOCJD_RS14160 (ACOCJD_14160) | - | 2833341..2833712 (+) | 372 | WP_001557190.1 | hypothetical protein | - |
| ACOCJD_RS14165 (ACOCJD_14165) | - | 2833705..2833956 (+) | 252 | WP_001836226.1 | DUF1024 family protein | - |
| ACOCJD_RS14170 (ACOCJD_14170) | - | 2833946..2834128 (+) | 183 | WP_000028421.1 | hypothetical protein | - |
| ACOCJD_RS14175 (ACOCJD_14175) | - | 2834121..2834630 (+) | 510 | WP_031866561.1 | dUTP diphosphatase | - |
| ACOCJD_RS14180 (ACOCJD_14180) | - | 2834667..2834819 (+) | 153 | WP_031768020.1 | DUF1381 domain-containing protein | - |
| ACOCJD_RS14185 (ACOCJD_14185) | - | 2834812..2835270 (+) | 459 | WP_031768021.1 | hypothetical protein | - |
| ACOCJD_RS14190 (ACOCJD_14190) | rinB | 2835283..2835432 (+) | 150 | WP_070030217.1 | transcriptional activator RinB | - |
| ACOCJD_RS14195 (ACOCJD_14195) | - | 2835591..2836241 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| ACOCJD_RS14200 (ACOCJD_14200) | - | 2836241..2836441 (+) | 201 | WP_103146217.1 | DUF1514 family protein | - |
| ACOCJD_RS14205 (ACOCJD_14205) | - | 2836469..2836885 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| ACOCJD_RS14210 (ACOCJD_14210) | - | 2837117..2837416 (+) | 300 | WP_000988330.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17730.57 Da Isoelectric Point: 4.7821
>NTDB_id=1109697 ACOCJD_RS14130 WP_017466775.1 2830683..2831153(+) (ssbA) [Staphylococcus aureus strain CBTW2018008]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDNQQDLYQQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDNQQDLYQQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1109697 ACOCJD_RS14130 WP_017466775.1 2830683..2831153(+) (ssbA) [Staphylococcus aureus strain CBTW2018008]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAAATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAAATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.941 |
100 |
0.577 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
34.682 |
100 |
0.385 |
| ssb | Neisseria gonorrhoeae MS11 |
34.682 |
100 |
0.385 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |