Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACOCJE_RS13405 Genome accession   NZ_CP184547
Coordinates   2728635..2729105 (+) Length   156 a.a.
NCBI ID   WP_017466775.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SCTW2021015     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2703891..2735357 2728635..2729105 within 0


Gene organization within MGE regions


Location: 2703891..2735357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOCJE_RS13250 (ACOCJE_13250) - 2703891..2704517 (-) 627 WP_000522384.1 nitroreductase family protein -
  ACOCJE_RS13255 (ACOCJE_13255) - 2704714..2705958 (+) 1245 WP_000119492.1 SdrH family protein -
  ACOCJE_RS13260 (ACOCJE_13260) mroQ 2705983..2706726 (-) 744 WP_084578716.1 CPBP family intramembrane glutamic endopeptidase MroQ -
  ACOCJE_RS13265 (ACOCJE_13265) groES 2706901..2707185 (+) 285 WP_000917289.1 co-chaperone GroES -
  ACOCJE_RS13270 (ACOCJE_13270) groL 2707261..2708877 (+) 1617 WP_000240642.1 chaperonin GroEL -
  ACOCJE_RS13275 (ACOCJE_13275) - 2709418..2709597 (+) 180 WP_000201398.1 hypothetical protein -
  ACOCJE_RS13280 (ACOCJE_13280) - 2709594..2710220 (+) 627 WP_000216896.1 hypothetical protein -
  ACOCJE_RS13285 (ACOCJE_13285) - 2710759..2712066 (-) 1308 WP_001045074.1 TrkH family potassium uptake protein -
  ACOCJE_RS13290 (ACOCJE_13290) - 2712449..2713672 (-) 1224 WP_000206618.1 ArgE/DapE family deacylase -
  ACOCJE_RS13295 (ACOCJE_13295) - 2714104..2715159 (+) 1056 WP_000791397.1 leukocidin family pore-forming toxin -
  ACOCJE_RS13300 (ACOCJE_13300) - 2715181..2716197 (+) 1017 WP_000595612.1 leukocidin/hemolysin toxin family protein -
  ACOCJE_RS13305 (ACOCJE_13305) sph 2716459..2717283 (-) 825 Protein_2581 sphingomyelin phosphodiesterase -
  ACOCJE_RS13310 (ACOCJE_13310) - 2717340..2718377 (-) 1038 WP_084568224.1 tyrosine-type recombinase/integrase -
  ACOCJE_RS13315 (ACOCJE_13315) - 2718436..2718900 (-) 465 WP_000825947.1 hypothetical protein -
  ACOCJE_RS13320 (ACOCJE_13320) - 2719000..2719182 (-) 183 WP_000705248.1 hypothetical protein -
  ACOCJE_RS13325 (ACOCJE_13325) - 2719227..2720084 (-) 858 WP_084578715.1 HIRAN domain-containing protein -
  ACOCJE_RS13330 (ACOCJE_13330) - 2720096..2720812 (-) 717 WP_001083967.1 LexA family transcriptional regulator -
  ACOCJE_RS13335 (ACOCJE_13335) - 2720976..2721218 (+) 243 WP_000639927.1 DUF739 family protein -
  ACOCJE_RS13340 (ACOCJE_13340) - 2721232..2721492 (+) 261 WP_000435341.1 transcriptional regulator -
  ACOCJE_RS13345 (ACOCJE_13345) - 2721516..2722055 (-) 540 WP_000351243.1 hypothetical protein -
  ACOCJE_RS13350 (ACOCJE_13350) - 2722112..2722867 (+) 756 WP_001148341.1 phage antirepressor KilAC domain-containing protein -
  ACOCJE_RS13355 (ACOCJE_13355) - 2722883..2723080 (+) 198 WP_001148861.1 hypothetical protein -
  ACOCJE_RS13360 (ACOCJE_13360) - 2723111..2723251 (+) 141 WP_000939496.1 hypothetical protein -
  ACOCJE_RS13365 (ACOCJE_13365) - 2723266..2723898 (-) 633 WP_000275058.1 hypothetical protein -
  ACOCJE_RS13370 (ACOCJE_13370) - 2723957..2724277 (+) 321 WP_001120197.1 DUF771 domain-containing protein -
  ACOCJE_RS13375 (ACOCJE_13375) - 2724274..2724435 (+) 162 WP_000066020.1 DUF1270 domain-containing protein -
  ACOCJE_RS13380 (ACOCJE_13380) - 2724530..2724790 (+) 261 WP_000291489.1 DUF1108 family protein -
  ACOCJE_RS13385 (ACOCJE_13385) - 2724799..2725062 (+) 264 WP_001205732.1 hypothetical protein -
  ACOCJE_RS13390 (ACOCJE_13390) - 2725071..2727014 (+) 1944 WP_084578714.1 AAA family ATPase -
  ACOCJE_RS13395 (ACOCJE_13395) - 2727016..2727936 (+) 921 WP_000138475.1 recombinase RecT -
  ACOCJE_RS13400 (ACOCJE_13400) - 2728017..2728634 (+) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  ACOCJE_RS13405 (ACOCJE_13405) ssbA 2728635..2729105 (+) 471 WP_017466775.1 single-stranded DNA-binding protein Machinery gene
  ACOCJE_RS13410 (ACOCJE_13410) - 2729135..2730008 (+) 874 Protein_2602 DnaD domain protein -
  ACOCJE_RS13415 (ACOCJE_13415) - 2730015..2730233 (+) 219 WP_420228461.1 hypothetical protein -
  ACOCJE_RS13420 (ACOCJE_13420) - 2730242..2730646 (+) 405 WP_000401964.1 RusA family crossover junction endodeoxyribonuclease -
  ACOCJE_RS13425 (ACOCJE_13425) - 2730659..2731027 (+) 369 WP_000101270.1 SA1788 family PVL leukocidin-associated protein -
  ACOCJE_RS13430 (ACOCJE_13430) - 2731031..2731273 (+) 243 WP_000131379.1 phi PVL orf 51-like protein -
  ACOCJE_RS13435 (ACOCJE_13435) - 2731282..2731653 (+) 372 WP_001616813.1 hypothetical protein -
  ACOCJE_RS13440 (ACOCJE_13440) - 2731646..2731897 (+) 252 WP_001836226.1 DUF1024 family protein -
  ACOCJE_RS13445 (ACOCJE_13445) - 2731887..2732069 (+) 183 WP_000028421.1 hypothetical protein -
  ACOCJE_RS13450 (ACOCJE_13450) - 2732062..2732571 (+) 510 WP_031866561.1 dUTP diphosphatase -
  ACOCJE_RS13455 (ACOCJE_13455) - 2732608..2732760 (+) 153 WP_031768020.1 DUF1381 domain-containing protein -
  ACOCJE_RS13460 (ACOCJE_13460) - 2732753..2733211 (+) 459 WP_031768021.1 hypothetical protein -
  ACOCJE_RS13465 (ACOCJE_13465) rinB 2733224..2733373 (+) 150 WP_070030217.1 transcriptional activator RinB -
  ACOCJE_RS13470 (ACOCJE_13470) - 2733532..2734182 (+) 651 WP_084578713.1 hypothetical protein -
  ACOCJE_RS13475 (ACOCJE_13475) - 2734182..2734382 (+) 201 WP_000265041.1 DUF1514 family protein -
  ACOCJE_RS13480 (ACOCJE_13480) - 2734410..2734826 (+) 417 WP_000590122.1 hypothetical protein -
  ACOCJE_RS13485 (ACOCJE_13485) - 2735058..2735357 (+) 300 WP_000988330.1 HNH endonuclease -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17730.57 Da        Isoelectric Point: 4.7821

>NTDB_id=1109297 ACOCJE_RS13405 WP_017466775.1 2728635..2729105(+) (ssbA) [Staphylococcus aureus strain SCTW2021015]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDNQQDLYQQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1109297 ACOCJE_RS13405 WP_017466775.1 2728635..2729105(+) (ssbA) [Staphylococcus aureus strain SCTW2021015]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAAATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

52.941

100

0.577
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Neisseria meningitidis MC58

34.682

100

0.385
  ssb Neisseria gonorrhoeae MS11

34.682

100

0.385
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment