Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACOCJG_RS13835 | Genome accession | NZ_CP184545 |
| Coordinates | 2801776..2802246 (+) | Length | 156 a.a. |
| NCBI ID | WP_017466775.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain CBTW2022135 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2777046..2808509 | 2801776..2802246 | within | 0 |
Gene organization within MGE regions
Location: 2777046..2808509
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOCJG_RS13680 (ACOCJG_13680) | - | 2777046..2777672 (-) | 627 | WP_000522384.1 | nitroreductase family protein | - |
| ACOCJG_RS13685 (ACOCJG_13685) | - | 2777869..2779101 (+) | 1233 | WP_183137443.1 | SdrH family protein | - |
| ACOCJG_RS13690 (ACOCJG_13690) | mroQ | 2779126..2779869 (-) | 744 | WP_000197638.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| ACOCJG_RS13695 (ACOCJG_13695) | groES | 2780044..2780328 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| ACOCJG_RS13700 (ACOCJG_13700) | groL | 2780404..2782020 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| ACOCJG_RS13705 (ACOCJG_13705) | - | 2782561..2782740 (+) | 180 | WP_000201398.1 | hypothetical protein | - |
| ACOCJG_RS13710 (ACOCJG_13710) | - | 2782737..2783363 (+) | 627 | WP_000216896.1 | hypothetical protein | - |
| ACOCJG_RS13715 (ACOCJG_13715) | - | 2783902..2785209 (-) | 1308 | WP_001045074.1 | TrkH family potassium uptake protein | - |
| ACOCJG_RS13720 (ACOCJG_13720) | - | 2785592..2786815 (-) | 1224 | WP_000206618.1 | ArgE/DapE family deacylase | - |
| ACOCJG_RS13725 (ACOCJG_13725) | - | 2787247..2788302 (+) | 1056 | WP_000791397.1 | leukocidin family pore-forming toxin | - |
| ACOCJG_RS13730 (ACOCJG_13730) | - | 2788324..2789340 (+) | 1017 | WP_000595612.1 | leukocidin/hemolysin toxin family protein | - |
| ACOCJG_RS13735 (ACOCJG_13735) | sph | 2789602..2790426 (-) | 825 | Protein_2664 | sphingomyelin phosphodiesterase | - |
| ACOCJG_RS13740 (ACOCJG_13740) | - | 2790483..2791520 (-) | 1038 | WP_000857191.1 | tyrosine-type recombinase/integrase | - |
| ACOCJG_RS13745 (ACOCJG_13745) | - | 2791579..2792043 (-) | 465 | WP_218692227.1 | hypothetical protein | - |
| ACOCJG_RS13750 (ACOCJG_13750) | - | 2792143..2792325 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| ACOCJG_RS13755 (ACOCJG_13755) | - | 2792370..2793227 (-) | 858 | WP_000804507.1 | HIRAN domain-containing protein | - |
| ACOCJG_RS13760 (ACOCJG_13760) | - | 2793239..2793955 (-) | 717 | WP_001083967.1 | LexA family transcriptional regulator | - |
| ACOCJG_RS13765 (ACOCJG_13765) | - | 2794119..2794361 (+) | 243 | WP_000639927.1 | DUF739 family protein | - |
| ACOCJG_RS13770 (ACOCJG_13770) | - | 2794375..2794635 (+) | 261 | Protein_2671 | transcriptional regulator | - |
| ACOCJG_RS13775 (ACOCJG_13775) | - | 2794659..2795198 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| ACOCJG_RS13780 (ACOCJG_13780) | - | 2795255..2796010 (+) | 756 | WP_001148341.1 | phage antirepressor KilAC domain-containing protein | - |
| ACOCJG_RS13785 (ACOCJG_13785) | - | 2796026..2796223 (+) | 198 | WP_001148861.1 | hypothetical protein | - |
| ACOCJG_RS13790 (ACOCJG_13790) | - | 2796254..2796394 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| ACOCJG_RS13795 (ACOCJG_13795) | - | 2796409..2797041 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| ACOCJG_RS13800 (ACOCJG_13800) | - | 2797100..2797420 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| ACOCJG_RS13805 (ACOCJG_13805) | - | 2797417..2797578 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| ACOCJG_RS13810 (ACOCJG_13810) | - | 2797671..2797931 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| ACOCJG_RS13815 (ACOCJG_13815) | - | 2797940..2798203 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| ACOCJG_RS13820 (ACOCJG_13820) | - | 2798212..2800155 (+) | 1944 | WP_103146213.1 | AAA family ATPase | - |
| ACOCJG_RS13825 (ACOCJG_13825) | - | 2800157..2801077 (+) | 921 | WP_103146214.1 | recombinase RecT | - |
| ACOCJG_RS13830 (ACOCJG_13830) | - | 2801158..2801775 (+) | 618 | WP_224211742.1 | MBL fold metallo-hydrolase | - |
| ACOCJG_RS13835 (ACOCJG_13835) | ssbA | 2801776..2802246 (+) | 471 | WP_017466775.1 | single-stranded DNA-binding protein | Machinery gene |
| ACOCJG_RS13840 (ACOCJG_13840) | - | 2802276..2803160 (+) | 885 | WP_103146215.1 | DnaD domain protein | - |
| ACOCJG_RS13845 (ACOCJG_13845) | - | 2803167..2803385 (+) | 219 | WP_053819389.1 | hypothetical protein | - |
| ACOCJG_RS13850 (ACOCJG_13850) | - | 2803394..2803798 (+) | 405 | WP_103146216.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ACOCJG_RS13855 (ACOCJG_13855) | - | 2803811..2804179 (+) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| ACOCJG_RS13860 (ACOCJG_13860) | - | 2804183..2804425 (+) | 243 | WP_000131379.1 | phi PVL orf 51-like protein | - |
| ACOCJG_RS13865 (ACOCJG_13865) | - | 2804434..2804805 (+) | 372 | WP_001557190.1 | hypothetical protein | - |
| ACOCJG_RS13870 (ACOCJG_13870) | - | 2804798..2805049 (+) | 252 | WP_001836226.1 | DUF1024 family protein | - |
| ACOCJG_RS13875 (ACOCJG_13875) | - | 2805039..2805221 (+) | 183 | WP_000028421.1 | hypothetical protein | - |
| ACOCJG_RS13880 (ACOCJG_13880) | - | 2805214..2805723 (+) | 510 | WP_031866561.1 | dUTP diphosphatase | - |
| ACOCJG_RS13885 (ACOCJG_13885) | - | 2805760..2805912 (+) | 153 | WP_031768020.1 | DUF1381 domain-containing protein | - |
| ACOCJG_RS13890 (ACOCJG_13890) | - | 2805905..2806363 (+) | 459 | WP_031768021.1 | hypothetical protein | - |
| ACOCJG_RS13895 (ACOCJG_13895) | rinB | 2806376..2806525 (+) | 150 | WP_070030217.1 | transcriptional activator RinB | - |
| ACOCJG_RS13900 (ACOCJG_13900) | - | 2806684..2807334 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| ACOCJG_RS13905 (ACOCJG_13905) | - | 2807334..2807534 (+) | 201 | WP_103146217.1 | DUF1514 family protein | - |
| ACOCJG_RS13910 (ACOCJG_13910) | - | 2807562..2807978 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| ACOCJG_RS13915 (ACOCJG_13915) | - | 2808210..2808509 (+) | 300 | WP_000988330.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17730.57 Da Isoelectric Point: 4.7821
>NTDB_id=1109253 ACOCJG_RS13835 WP_017466775.1 2801776..2802246(+) (ssbA) [Staphylococcus aureus strain CBTW2022135]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDNQQDLYQQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDNQQDLYQQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1109253 ACOCJG_RS13835 WP_017466775.1 2801776..2802246(+) (ssbA) [Staphylococcus aureus strain CBTW2022135]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAAATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAAATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.941 |
100 |
0.577 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
34.682 |
100 |
0.385 |
| ssb | Neisseria gonorrhoeae MS11 |
34.682 |
100 |
0.385 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |