Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACOCI7_RS14110 | Genome accession | NZ_CP184543 |
| Coordinates | 2830764..2831234 (+) | Length | 156 a.a. |
| NCBI ID | WP_017466775.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain CBTW2022289 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2806022..2837497 | 2830764..2831234 | within | 0 |
Gene organization within MGE regions
Location: 2806022..2837497
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOCI7_RS13955 (ACOCI7_13955) | - | 2806022..2806648 (-) | 627 | WP_000522384.1 | nitroreductase family protein | - |
| ACOCI7_RS13960 (ACOCI7_13960) | - | 2806845..2808089 (+) | 1245 | WP_000119492.1 | SdrH family protein | - |
| ACOCI7_RS13965 (ACOCI7_13965) | mroQ | 2808114..2808857 (-) | 744 | WP_000197638.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| ACOCI7_RS13970 (ACOCI7_13970) | groES | 2809032..2809316 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| ACOCI7_RS13975 (ACOCI7_13975) | groL | 2809392..2811008 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| ACOCI7_RS13980 (ACOCI7_13980) | - | 2811549..2811728 (+) | 180 | WP_000201398.1 | hypothetical protein | - |
| ACOCI7_RS13985 (ACOCI7_13985) | - | 2811725..2812351 (+) | 627 | WP_000216896.1 | hypothetical protein | - |
| ACOCI7_RS13990 (ACOCI7_13990) | - | 2812890..2814197 (-) | 1308 | WP_001045074.1 | TrkH family potassium uptake protein | - |
| ACOCI7_RS13995 (ACOCI7_13995) | - | 2814580..2815803 (-) | 1224 | WP_000206618.1 | ArgE/DapE family deacylase | - |
| ACOCI7_RS14000 (ACOCI7_14000) | - | 2816235..2817290 (+) | 1056 | WP_000791397.1 | leukocidin family pore-forming toxin | - |
| ACOCI7_RS14005 (ACOCI7_14005) | - | 2817312..2818328 (+) | 1017 | WP_420228566.1 | leukocidin/hemolysin toxin family protein | - |
| ACOCI7_RS14010 (ACOCI7_14010) | sph | 2818590..2819414 (-) | 825 | Protein_2720 | sphingomyelin phosphodiesterase | - |
| ACOCI7_RS14015 (ACOCI7_14015) | - | 2819471..2820508 (-) | 1038 | WP_000857191.1 | tyrosine-type recombinase/integrase | - |
| ACOCI7_RS14020 (ACOCI7_14020) | - | 2820567..2821031 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| ACOCI7_RS14025 (ACOCI7_14025) | - | 2821131..2821313 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| ACOCI7_RS14030 (ACOCI7_14030) | - | 2821358..2822215 (-) | 858 | WP_000804507.1 | HIRAN domain-containing protein | - |
| ACOCI7_RS14035 (ACOCI7_14035) | - | 2822227..2822943 (-) | 717 | WP_001083967.1 | LexA family transcriptional regulator | - |
| ACOCI7_RS14040 (ACOCI7_14040) | - | 2823107..2823349 (+) | 243 | WP_000639927.1 | DUF739 family protein | - |
| ACOCI7_RS14045 (ACOCI7_14045) | - | 2823363..2823623 (+) | 261 | Protein_2727 | transcriptional regulator | - |
| ACOCI7_RS14050 (ACOCI7_14050) | - | 2823647..2824186 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| ACOCI7_RS14055 (ACOCI7_14055) | - | 2824243..2824998 (+) | 756 | WP_001148341.1 | phage antirepressor KilAC domain-containing protein | - |
| ACOCI7_RS14060 (ACOCI7_14060) | - | 2825014..2825211 (+) | 198 | WP_001148861.1 | hypothetical protein | - |
| ACOCI7_RS14065 (ACOCI7_14065) | - | 2825242..2825382 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| ACOCI7_RS14070 (ACOCI7_14070) | - | 2825397..2826029 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| ACOCI7_RS14075 (ACOCI7_14075) | - | 2826088..2826408 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| ACOCI7_RS14080 (ACOCI7_14080) | - | 2826405..2826566 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| ACOCI7_RS14085 (ACOCI7_14085) | - | 2826659..2826919 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| ACOCI7_RS14090 (ACOCI7_14090) | - | 2826928..2827191 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| ACOCI7_RS14095 (ACOCI7_14095) | - | 2827200..2829143 (+) | 1944 | WP_103146213.1 | AAA family ATPase | - |
| ACOCI7_RS14100 (ACOCI7_14100) | - | 2829145..2830065 (+) | 921 | WP_103146214.1 | recombinase RecT | - |
| ACOCI7_RS14105 (ACOCI7_14105) | - | 2830146..2830763 (+) | 618 | WP_224211742.1 | MBL fold metallo-hydrolase | - |
| ACOCI7_RS14110 (ACOCI7_14110) | ssbA | 2830764..2831234 (+) | 471 | WP_017466775.1 | single-stranded DNA-binding protein | Machinery gene |
| ACOCI7_RS14115 (ACOCI7_14115) | - | 2831264..2832148 (+) | 885 | WP_103146215.1 | DnaD domain protein | - |
| ACOCI7_RS14120 (ACOCI7_14120) | - | 2832155..2832373 (+) | 219 | WP_053819389.1 | hypothetical protein | - |
| ACOCI7_RS14125 (ACOCI7_14125) | - | 2832382..2832786 (+) | 405 | WP_103146216.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ACOCI7_RS14130 (ACOCI7_14130) | - | 2832799..2833167 (+) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| ACOCI7_RS14135 (ACOCI7_14135) | - | 2833171..2833413 (+) | 243 | WP_000131379.1 | phi PVL orf 51-like protein | - |
| ACOCI7_RS14140 (ACOCI7_14140) | - | 2833422..2833793 (+) | 372 | WP_001557190.1 | hypothetical protein | - |
| ACOCI7_RS14145 (ACOCI7_14145) | - | 2833786..2834037 (+) | 252 | WP_001836226.1 | DUF1024 family protein | - |
| ACOCI7_RS14150 (ACOCI7_14150) | - | 2834027..2834209 (+) | 183 | WP_000028421.1 | hypothetical protein | - |
| ACOCI7_RS14155 (ACOCI7_14155) | - | 2834202..2834711 (+) | 510 | WP_031866561.1 | dUTP diphosphatase | - |
| ACOCI7_RS14160 (ACOCI7_14160) | - | 2834748..2834900 (+) | 153 | WP_031768020.1 | DUF1381 domain-containing protein | - |
| ACOCI7_RS14165 (ACOCI7_14165) | - | 2834893..2835351 (+) | 459 | WP_031768021.1 | hypothetical protein | - |
| ACOCI7_RS14170 (ACOCI7_14170) | rinB | 2835364..2835513 (+) | 150 | WP_070030217.1 | transcriptional activator RinB | - |
| ACOCI7_RS14175 (ACOCI7_14175) | - | 2835672..2836322 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| ACOCI7_RS14180 (ACOCI7_14180) | - | 2836322..2836522 (+) | 201 | WP_103146217.1 | DUF1514 family protein | - |
| ACOCI7_RS14185 (ACOCI7_14185) | - | 2836550..2836966 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| ACOCI7_RS14190 (ACOCI7_14190) | - | 2837198..2837497 (+) | 300 | WP_000988330.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17730.57 Da Isoelectric Point: 4.7821
>NTDB_id=1109209 ACOCI7_RS14110 WP_017466775.1 2830764..2831234(+) (ssbA) [Staphylococcus aureus strain CBTW2022289]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDNQQDLYQQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDNQQDLYQQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1109209 ACOCI7_RS14110 WP_017466775.1 2830764..2831234(+) (ssbA) [Staphylococcus aureus strain CBTW2022289]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAAATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAAATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.941 |
100 |
0.577 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
34.682 |
100 |
0.385 |
| ssb | Neisseria gonorrhoeae MS11 |
34.682 |
100 |
0.385 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |