Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACOCJK_RS10080 Genome accession   NZ_CP184541
Coordinates   2040664..2041134 (-) Length   156 a.a.
NCBI ID   WP_017466775.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SCTW2022336     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2035664..2046134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOCJK_RS10020 (ACOCJK_10020) rinB 2036385..2036534 (-) 150 WP_070030217.1 transcriptional activator RinB -
  ACOCJK_RS10025 (ACOCJK_10025) - 2036547..2037005 (-) 459 WP_031768021.1 hypothetical protein -
  ACOCJK_RS10030 (ACOCJK_10030) - 2036998..2037150 (-) 153 WP_031768020.1 DUF1381 domain-containing protein -
  ACOCJK_RS10035 (ACOCJK_10035) - 2037187..2037696 (-) 510 WP_031866561.1 dUTP diphosphatase -
  ACOCJK_RS10040 (ACOCJK_10040) - 2037689..2037871 (-) 183 WP_000028421.1 hypothetical protein -
  ACOCJK_RS10045 (ACOCJK_10045) - 2037861..2038112 (-) 252 WP_001836226.1 DUF1024 family protein -
  ACOCJK_RS10050 (ACOCJK_10050) - 2038105..2038476 (-) 372 WP_001557190.1 hypothetical protein -
  ACOCJK_RS10055 (ACOCJK_10055) - 2038485..2038727 (-) 243 WP_000131379.1 phi PVL orf 51-like protein -
  ACOCJK_RS10060 (ACOCJK_10060) - 2038731..2039099 (-) 369 WP_000101270.1 SA1788 family PVL leukocidin-associated protein -
  ACOCJK_RS10065 (ACOCJK_10065) - 2039112..2039516 (-) 405 WP_103146216.1 RusA family crossover junction endodeoxyribonuclease -
  ACOCJK_RS10070 (ACOCJK_10070) - 2039525..2039743 (-) 219 WP_053819389.1 hypothetical protein -
  ACOCJK_RS10075 (ACOCJK_10075) - 2039750..2040634 (-) 885 WP_103146215.1 DnaD domain protein -
  ACOCJK_RS10080 (ACOCJK_10080) ssbA 2040664..2041134 (-) 471 WP_017466775.1 single-stranded DNA-binding protein Machinery gene
  ACOCJK_RS10085 (ACOCJK_10085) - 2041135..2041752 (-) 618 WP_224211742.1 MBL fold metallo-hydrolase -
  ACOCJK_RS10090 (ACOCJK_10090) - 2041833..2042753 (-) 921 WP_103146214.1 recombinase RecT -
  ACOCJK_RS10095 (ACOCJK_10095) - 2042755..2044698 (-) 1944 WP_103146213.1 AAA family ATPase -
  ACOCJK_RS10100 (ACOCJK_10100) - 2044707..2044970 (-) 264 WP_001205732.1 hypothetical protein -
  ACOCJK_RS10105 (ACOCJK_10105) - 2044979..2045239 (-) 261 WP_000291488.1 DUF1108 family protein -
  ACOCJK_RS10110 (ACOCJK_10110) - 2045332..2045493 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  ACOCJK_RS10115 (ACOCJK_10115) - 2045490..2045810 (-) 321 WP_001120197.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17730.57 Da        Isoelectric Point: 4.7821

>NTDB_id=1109158 ACOCJK_RS10080 WP_017466775.1 2040664..2041134(-) (ssbA) [Staphylococcus aureus strain SCTW2022336]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDNQQDLYQQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1109158 ACOCJK_RS10080 WP_017466775.1 2040664..2041134(-) (ssbA) [Staphylococcus aureus strain SCTW2022336]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAAATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

52.941

100

0.577
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Neisseria meningitidis MC58

34.682

100

0.385
  ssb Neisseria gonorrhoeae MS11

34.682

100

0.385
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment