Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   ID09_RS10390 Genome accession   NZ_CP008921
Coordinates   2106197..2106646 (-) Length   149 a.a.
NCBI ID   WP_012027921.1    Uniprot ID   G9CHX9
Organism   Streptococcus suis 6407     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2101197..2111646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS10370 (ID09_10645) - 2101628..2102161 (-) 534 WP_024381193.1 histidine phosphatase family protein -
  ID09_RS10375 (ID09_10650) - 2102168..2102611 (-) 444 WP_002939955.1 dUTP diphosphatase -
  ID09_RS10380 (ID09_10655) - 2102713..2104497 (-) 1785 WP_024381194.1 ABC transporter ATP-binding protein -
  ID09_RS10385 (ID09_10660) - 2104498..2106204 (-) 1707 WP_024381195.1 ABC transporter ATP-binding protein -
  ID09_RS10390 (ID09_10665) rcrR 2106197..2106646 (-) 450 WP_012027921.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  ID09_RS10395 (ID09_10670) - 2106868..2107884 (+) 1017 WP_024381196.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  ID09_RS10400 (ID09_10675) galU 2107929..2108828 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ID09_RS10405 (ID09_10680) - 2108846..2109523 (-) 678 WP_024381197.1 rhomboid family intramembrane serine protease -
  ID09_RS10410 (ID09_10685) - 2109507..2110049 (-) 543 WP_024381198.1 5-formyltetrahydrofolate cyclo-ligase -
  ID09_RS10415 (ID09_10690) - 2110090..2111216 (-) 1127 Protein_2040 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17284.90 Da        Isoelectric Point: 8.9142

>NTDB_id=110895 ID09_RS10390 WP_012027921.1 2106197..2106646(-) (rcrR) [Streptococcus suis 6407]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEAETFVKDIEAELKISKSVASNLVKRMEKNGFIQ
VLPSKVDKRFKQLVLTEKGQGKICHLKAFHEEMHHSLFWGIQKEDFDLVKQVGNQLKVNIQRYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=110895 ID09_RS10390 WP_012027921.1 2106197..2106646(-) (rcrR) [Streptococcus suis 6407]
ATGGGACATACTATTGCAGATTTTCGGAACTTGCTCAATCAGATTGAACAAATTAGTGAAACCATTGCAAAAGAATACGA
TGTGGAGCACTTGGCTGGTCCACAGGGCTGGGCCTTGCGCTTCATTGCGGAACGGTCGGAAGCCGAAACCTTTGTAAAAG
ATATAGAAGCGGAATTAAAGATTTCCAAATCGGTTGCCAGCAATCTGGTCAAGAGAATGGAGAAAAATGGCTTTATCCAA
GTCCTTCCCTCTAAGGTTGACAAACGCTTCAAACAGCTGGTTTTGACAGAGAAGGGACAAGGGAAGATATGTCACCTGAA
AGCTTTTCATGAAGAAATGCACCATTCACTTTTTTGGGGCATTCAAAAAGAGGACTTTGACTTGGTTAAACAGGTGGGCA
ATCAATTAAAAGTAAATATTCAACGCTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G9CHX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416

Multiple sequence alignment