Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ID09_RS00690 Genome accession   NZ_CP008921
Coordinates   104275..104682 (+) Length   135 a.a.
NCBI ID   WP_024382123.1    Uniprot ID   -
Organism   Streptococcus suis 6407     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99275..109682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS00665 (ID09_00680) - 100676..101041 (+) 366 WP_002936568.1 DUF1033 family protein -
  ID09_RS00670 (ID09_00685) - 101076..102026 (-) 951 WP_024382126.1 S66 peptidase family protein -
  ID09_RS00675 (ID09_00690) comGA 102112..103062 (+) 951 WP_024382125.1 competence type IV pilus ATPase ComGA Machinery gene
  ID09_RS00680 (ID09_00695) comGB 102974..104011 (+) 1038 WP_255195823.1 competence type IV pilus assembly protein ComGB Machinery gene
  ID09_RS00685 (ID09_00700) comGC 104013..104294 (+) 282 WP_024382124.1 competence type IV pilus major pilin ComGC Machinery gene
  ID09_RS00690 (ID09_00705) comGD 104275..104682 (+) 408 WP_024382123.1 competence type IV pilus minor pilin ComGD Machinery gene
  ID09_RS00695 (ID09_00710) comGE 104654..104947 (+) 294 WP_024382122.1 competence type IV pilus minor pilin ComGE Machinery gene
  ID09_RS00700 (ID09_00715) comGF/cglF 104934..105368 (+) 435 WP_024382121.1 competence type IV pilus minor pilin ComGF Machinery gene
  ID09_RS00705 (ID09_00720) comGG 105346..105756 (+) 411 WP_024382120.1 competence type IV pilus minor pilin ComGG -
  ID09_RS00710 (ID09_00725) comGH 105813..106766 (+) 954 WP_024382119.1 class I SAM-dependent methyltransferase Machinery gene
  ID09_RS00715 (ID09_00730) - 106816..108003 (+) 1188 WP_038425630.1 acetate kinase -
  ID09_RS00720 (ID09_00735) - 108318..108869 (+) 552 WP_024382117.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15447.64 Da        Isoelectric Point: 9.3252

>NTDB_id=110822 ID09_RS00690 WP_024382123.1 104275..104682(+) (comGD) [Streptococcus suis 6407]
MLRRRNKAFTLFESLLTLFVISFLAISLSGTVQTAFRSVQEEIFLWEFEAIYKDSQKLAASSHQKVNLAIGGQEVTNGYQ
AVEVPRNVEVLEEKTIQFEENGGNSSLTKIRFRLSQKIVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=110822 ID09_RS00690 WP_024382123.1 104275..104682(+) (comGD) [Streptococcus suis 6407]
ATGCTAAGGCGAAGAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTGACTTTATTTGTCATCAGCTTTCTGGCAATCAG
CCTGTCGGGAACAGTACAAACGGCCTTTCGGTCTGTTCAGGAAGAAATTTTCCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCCAGTTCCCACCAAAAAGTGAACCTTGCTATCGGTGGACAGGAAGTTACAAATGGTTATCAG
GCTGTAGAGGTACCCAGAAACGTAGAGGTCTTAGAGGAGAAAACTATTCAGTTTGAAGAAAATGGAGGAAATTCGTCTCT
GACCAAGATTCGTTTTCGGCTTAGTCAAAAAATAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

47.328

97.037

0.459
  comGD Streptococcus mutans UA159

47.328

97.037

0.459
  comGD Streptococcus gordonii str. Challis substr. CH1

48.031

94.074

0.452
  comGD/cglD Streptococcus pneumoniae R6

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae TIGR4

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae Rx1

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae D39

44.961

95.556

0.43
  comGD/cglD Streptococcus mitis NCTC 12261

44.186

95.556

0.422
  comGD/cglD Streptococcus mitis SK321

43.411

95.556

0.415

Multiple sequence alignment