Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ACLKM1_RS11890 Genome accession   NZ_CP183903
Coordinates   2479588..2480301 (-) Length   237 a.a.
NCBI ID   WP_005094323.1    Uniprot ID   A0A2H9YR71
Organism   Acinetobacter pseudolwoffii strain M5_NDM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2474588..2485301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM1_RS11870 aroB 2475210..2476289 (-) 1080 WP_411689825.1 3-dehydroquinate synthase -
  ACLKM1_RS11875 aroK 2476318..2476854 (-) 537 WP_180186049.1 shikimate kinase AroK -
  ACLKM1_RS11880 pilQ 2476891..2479044 (-) 2154 WP_411689826.1 type IV pilus secretin PilQ Machinery gene
  ACLKM1_RS11885 pilP 2479061..2479588 (-) 528 WP_005094322.1 pilus assembly protein PilP Machinery gene
  ACLKM1_RS11890 comO 2479588..2480301 (-) 714 WP_005094323.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACLKM1_RS11895 comN 2480298..2480936 (-) 639 WP_005094324.1 PilN domain-containing protein Machinery gene
  ACLKM1_RS11900 pilM 2480936..2481994 (-) 1059 WP_005168888.1 pilus assembly protein PilM Machinery gene
  ACLKM1_RS11905 ponA 2482160..2484688 (+) 2529 WP_286412290.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26928.51 Da        Isoelectric Point: 4.7604

>NTDB_id=1107096 ACLKM1_RS11890 WP_005094323.1 2479588..2480301(-) (comO) [Acinetobacter pseudolwoffii strain M5_NDM]
MSNEKFDEFSQDAVAVPKNKMTVEKFFQQFNTLDPNNYGSWPLSVKISCWIFIVILVFMLIYFALTRSTIESISQASAQE
QNLLNEFREKESKLRNLQQYQIQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNSGLKFKNIRLEPEIKQEFFIEQP
IAIEATGDYHAFGSFVSSIAGLSRIVTLHDFTITGTENKEKKSEIPVIDYVVKAKTYRYVGNAEASSAGTSTTQGAQ

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1107096 ACLKM1_RS11890 WP_005094323.1 2479588..2480301(-) (comO) [Acinetobacter pseudolwoffii strain M5_NDM]
ATGAGTAATGAAAAATTCGATGAGTTCAGCCAGGATGCCGTGGCTGTACCTAAAAATAAAATGACAGTTGAGAAATTTTT
TCAGCAATTCAATACTCTAGATCCTAATAATTATGGCAGCTGGCCTTTATCGGTCAAGATTAGCTGCTGGATTTTTATTG
TTATCTTGGTATTTATGCTGATTTATTTTGCTCTGACCAGAAGTACGATTGAATCGATTTCACAAGCCAGTGCCCAGGAA
CAAAACCTGCTGAATGAGTTTCGTGAAAAGGAATCAAAATTACGTAATCTACAACAATATCAGATTCAGCTTCAGGAAAT
GGAAGCACGTTTTAACCAGCAATTAGAACAATTGCCGAAGGAAACTGAAATTCCGGGTCTGGTCGAAGATATTAACCTGA
GCGGTGTCAATTCAGGTCTGAAGTTTAAAAATATCCGTCTGGAACCTGAAATTAAGCAAGAGTTCTTTATTGAACAGCCA
ATTGCGATTGAAGCGACTGGGGATTATCACGCTTTTGGTTCTTTTGTCAGCAGTATTGCCGGCTTGTCGCGTATTGTGAC
CTTGCATGATTTCACCATCACCGGTACTGAGAATAAAGAGAAAAAGTCTGAGATTCCGGTGATTGATTATGTGGTTAAGG
CCAAAACCTATCGTTATGTGGGCAATGCCGAGGCTTCTTCAGCAGGTACGAGCACGACTCAGGGGGCGCAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H9YR71

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.355

100

0.688
  pilO Acinetobacter baumannii D1279779

66.529

100

0.679

Multiple sequence alignment