Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   ACLKM1_RS11895 Genome accession   NZ_CP183903
Coordinates   2480298..2480936 (-) Length   212 a.a.
NCBI ID   WP_005094324.1    Uniprot ID   N9MCI1
Organism   Acinetobacter pseudolwoffii strain M5_NDM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2475298..2485936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM1_RS11875 aroK 2476318..2476854 (-) 537 WP_180186049.1 shikimate kinase AroK -
  ACLKM1_RS11880 pilQ 2476891..2479044 (-) 2154 WP_411689826.1 type IV pilus secretin PilQ Machinery gene
  ACLKM1_RS11885 pilP 2479061..2479588 (-) 528 WP_005094322.1 pilus assembly protein PilP Machinery gene
  ACLKM1_RS11890 comO 2479588..2480301 (-) 714 WP_005094323.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACLKM1_RS11895 comN 2480298..2480936 (-) 639 WP_005094324.1 PilN domain-containing protein Machinery gene
  ACLKM1_RS11900 pilM 2480936..2481994 (-) 1059 WP_005168888.1 pilus assembly protein PilM Machinery gene
  ACLKM1_RS11905 ponA 2482160..2484688 (+) 2529 WP_286412290.1 penicillin-binding protein PBP1a -
  ACLKM1_RS11910 - 2484752..2485555 (-) 804 WP_005094332.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23869.01 Da        Isoelectric Point: 4.8090

>NTDB_id=1107097 ACLKM1_RS11895 WP_005094324.1 2480298..2480936(-) (comN) [Acinetobacter pseudolwoffii strain M5_NDM]
MAKINLLPWRDELRIKRNNEFVAICVGALFLGLAAAGSTWFYYDHKLQDQEQANQLIQSTNQNLDVQLKALEGLQEQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPANMYITKFQRTGDKFSIEGRAESPNTVAELLRNLEASSWYRNAFMNAFLV
AEESKEKAPSSIIPRVEESYGSFTVTVDLDQIAEPVLNEEQQAANTTPGASS

Nucleotide


Download         Length: 639 bp        

>NTDB_id=1107097 ACLKM1_RS11895 WP_005094324.1 2480298..2480936(-) (comN) [Acinetobacter pseudolwoffii strain M5_NDM]
ATGGCAAAGATTAACTTACTTCCTTGGCGTGATGAGCTAAGAATTAAAAGAAATAATGAATTCGTGGCAATCTGTGTGGG
GGCGCTTTTCTTAGGACTGGCGGCGGCAGGTTCAACCTGGTTTTATTATGATCACAAGCTTCAGGATCAGGAACAGGCCA
ATCAGCTGATTCAAAGTACCAACCAGAATCTGGATGTGCAGTTAAAAGCACTAGAAGGTTTGCAAGAGCAACGTAATGCC
ATTGTTGAGCGGATGAAGCTGATTCAGGGCTTGCAAACGCAACGTCCGATCGCGGTACATTTGATTGATGAAATTGTACG
GGTGACACCAGCCAATATGTACATCACCAAGTTTCAGCGTACTGGCGATAAATTTAGCATCGAAGGTCGAGCCGAGAGTC
CAAATACCGTAGCAGAATTACTGCGTAATCTGGAAGCTTCCTCCTGGTACCGAAATGCCTTTATGAATGCCTTTCTGGTG
GCTGAAGAATCCAAAGAAAAGGCACCGAGCTCGATTATTCCACGTGTTGAAGAGTCTTATGGCAGCTTTACCGTGACTGT
GGATCTGGATCAGATCGCTGAACCGGTACTGAATGAAGAACAGCAAGCAGCCAATACCACTCCGGGGGCATCATCATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MCI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

66.986

98.585

0.66
  pilN Acinetobacter baumannii D1279779

70.466

91.038

0.642

Multiple sequence alignment