Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ACLKM1_RS11885 Genome accession   NZ_CP183903
Coordinates   2479061..2479588 (-) Length   175 a.a.
NCBI ID   WP_005094322.1    Uniprot ID   N9MDH9
Organism   Acinetobacter pseudolwoffii strain M5_NDM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2474061..2484588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM1_RS11865 - 2474325..2475197 (-) 873 WP_411689823.1 hypothetical protein -
  ACLKM1_RS11870 aroB 2475210..2476289 (-) 1080 WP_411689825.1 3-dehydroquinate synthase -
  ACLKM1_RS11875 aroK 2476318..2476854 (-) 537 WP_180186049.1 shikimate kinase AroK -
  ACLKM1_RS11880 pilQ 2476891..2479044 (-) 2154 WP_411689826.1 type IV pilus secretin PilQ Machinery gene
  ACLKM1_RS11885 pilP 2479061..2479588 (-) 528 WP_005094322.1 pilus assembly protein PilP Machinery gene
  ACLKM1_RS11890 comO 2479588..2480301 (-) 714 WP_005094323.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACLKM1_RS11895 comN 2480298..2480936 (-) 639 WP_005094324.1 PilN domain-containing protein Machinery gene
  ACLKM1_RS11900 pilM 2480936..2481994 (-) 1059 WP_005168888.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19268.39 Da        Isoelectric Point: 7.1659

>NTDB_id=1107095 ACLKM1_RS11885 WP_005094322.1 2479061..2479588(-) (pilP) [Acinetobacter pseudolwoffii strain M5_NDM]
MNRIKITSVLALGLVLLGCDSRIDAVNQEMANIRNQPPLPIEPAPDFMPVETFNYAAHQIKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLSMKGSMRNQAGQILALIQTPDGEIERIQRGSYMGLNHGRVSGITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1107095 ACLKM1_RS11885 WP_005094322.1 2479061..2479588(-) (pilP) [Acinetobacter pseudolwoffii strain M5_NDM]
ATGAATAGGATTAAAATTACTTCAGTTTTAGCGCTTGGACTGGTATTGCTGGGATGTGATTCACGTATTGATGCAGTCAA
TCAGGAAATGGCCAATATTCGTAACCAGCCACCTTTGCCGATTGAACCTGCACCCGATTTTATGCCAGTTGAAACCTTCA
ACTATGCAGCACATCAGATCAAAAGTCCTTTCCTGCCAAGTTCTCTGGCTGCCGAGCTAAAGATTATGGCAGGAAAACGG
GTTTATCCAAATTTATCACGTCAATTGCAACCACTGGAAAGTTATCCTCTGGAAACCTTGAGCATGAAAGGCAGCATGCG
TAATCAGGCCGGACAGATTCTGGCTTTAATCCAGACACCGGATGGCGAGATTGAACGGATACAGCGTGGTAGCTATATGG
GGCTTAATCATGGTCGTGTGAGTGGTATTACACCAACGCAGATCGATTTGATTGAGATTATTCCAGATGGCCGTGAAGGA
TATGTGGAGCGTCCGCGAAGTCTGGTTCTGATTGGGCCGGCACCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MDH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

78.363

97.714

0.766
  comL Acinetobacter baylyi ADP1

72.674

98.286

0.714

Multiple sequence alignment