Detailed information NTG1106233

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ACM62G_RS29060
• Genome accession: NZ_CP183808
• Coordinates: 6466941..6468110 (-)
• Length: 389 a.a.
• NCBI ID: WP_419736225.1
• Uniprot ID: -
• Organism: Pseudomonas sp. COR18
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6461941..6473110

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM62G_RS29045 (ACM62G_29045)	xylB	6462947..6464443 (+)	1497	WP_273820679.1	xylulokinase	-
ACM62G_RS29050 (ACM62G_29050)	-	6464450..6465388 (+)	939	WP_273820678.1	carbohydrate kinase family protein	-
ACM62G_RS29055 (ACM62G_29055)	-	6465675..6466910 (+)	1236	WP_152974402.1	hypothetical protein	-
ACM62G_RS29060 (ACM62G_29060)	pilU	6466941..6468110 (-)	1170	WP_419736225.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ACM62G_RS29065 (ACM62G_29065)	-	6468246..6470780 (+)	2535	WP_419736226.1	PAS domain-containing protein	-
ACM62G_RS29070 (ACM62G_29070)	-	6470826..6471101 (+)	276	WP_054059738.1	peptidylprolyl isomerase	-
ACM62G_RS29075 (ACM62G_29075)	-	6471237..6472163 (-)	927	WP_419736227.1	sugar kinase	-

Sequence

Protein

• Length: 389 a.a.
• Molecular weight: 43013.16 Da
• Isoelectric Point: 6.0252

>NTDB_id=1106233 ACM62G_RS29060 WP_419736225.1 6466941..6468110(-) (pilU) [Pseudomonas sp. COR18]
MEIHALLKLLAAQDGSDLYLSTGAPPCAKFNGVLKPLGTEALKTGEVALIADGIMDAEQRQQFERELEMNLALSLSGVGR
FRVNIFKQRNEVSIVARNIKLEIPRFEDLKLPPILLETIMEKRGLVLFVGATGSGKSTSLAALIDYRNRHSSGHIITIED
PVEYIHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEDRRPQLLNDLGNNLQAFVSQRLVRTTDGKRRAAVEVMLGTPTIRDFIKRNEFSELKGIMEKSEVSGMLTFDTAL
FNLVVEGAIDEEEALKNADSVNNLRLRLKLHQDGGALTPQSTPPAPPVAARELDVKDWGLVEDGEDGPG

Nucleotide

• Length: 1170 bp

>NTDB_id=1106233 ACM62G_RS29060 WP_419736225.1 6466941..6468110(-) (pilU) [Pseudomonas sp. COR18]
ATGGAAATCCACGCCTTGTTGAAACTCCTTGCCGCCCAGGACGGTTCGGACCTGTACCTGTCGACCGGGGCGCCGCCCTG
CGCCAAGTTCAATGGCGTACTCAAGCCGCTGGGCACCGAAGCGCTCAAGACCGGCGAGGTGGCGCTGATTGCCGACGGTA
TCATGGACGCCGAACAGCGCCAGCAGTTCGAACGGGAGTTGGAAATGAACCTGGCGTTGTCGTTGTCGGGTGTCGGGCGC
TTCCGGGTCAATATCTTCAAGCAGCGCAACGAGGTTTCCATCGTAGCCCGCAACATCAAGCTGGAAATACCCCGTTTCGA
AGACCTCAAGTTGCCGCCGATCCTGCTTGAAACCATCATGGAAAAGCGTGGCCTGGTGCTGTTCGTCGGTGCCACCGGCT
CGGGCAAGTCCACCTCCCTGGCGGCGCTGATCGACTACCGCAACCGGCATAGCAGCGGGCACATCATCACCATCGAGGAC
CCGGTGGAGTATATTCACCGGCACAAGAAGTCGATCATCAACCAGCGCGAGGTAGGGGTCGACACCCGCAGTTTCCATGC
CGCGCTGAAAAACACCCTGCGCCAGGCCCCGGACGTGATCCTGATCGGCGAGATCCGCGACCGTGAAACCATGGAGCACG
CCCTGGCCTTTGCCGACACCGGGCACCTGGCGATTTCCACCCTGCATGCCAACAATGCCAACCAGGCGCTGGACCGGATC
ATCAACTTCTTCCCCGAGGACCGTCGCCCGCAGTTGCTCAACGACCTGGGCAACAACCTGCAGGCCTTCGTCTCTCAGCG
TCTGGTGCGCACTACCGACGGCAAGCGCCGGGCCGCGGTCGAGGTGATGCTGGGGACACCGACGATCCGCGATTTCATCA
AGCGCAACGAGTTCTCCGAACTCAAGGGCATCATGGAGAAATCCGAGGTCAGCGGCATGCTGACCTTCGACACGGCGCTG
TTCAACCTGGTGGTGGAGGGGGCGATCGACGAGGAGGAGGCGCTGAAGAACGCCGACTCGGTGAACAACCTGCGCCTGCG
CCTGAAATTGCATCAGGACGGCGGGGCTCTGACCCCGCAGAGCACACCACCCGCGCCGCCGGTGGCGGCTCGGGAGCTGG
ATGTGAAGGACTGGGGCCTGGTGGAGGACGGCGAAGACGGCCCGGGTTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	56.593	93.573	0.53
pilU	Acinetobacter baylyi ADP1	52.941	91.774	0.486
pilU	Vibrio cholerae strain A1552	51.143	89.974	0.46
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.623	95.373	0.378
pilT	Pseudomonas stutzeri DSM 10701	40.87	88.689	0.362
pilT	Pseudomonas aeruginosa PAK	40.87	88.689	0.362