Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACN6IT_RS08630 Genome accession   NZ_CP183802
Coordinates   1804821..1805255 (-) Length   144 a.a.
NCBI ID   WP_005741096.1    Uniprot ID   -
Organism   Pasteurella multocida strain 190067     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1799821..1810255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6IT_RS08600 - 1800385..1800654 (-) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  ACN6IT_RS08605 yacG 1800654..1800857 (-) 204 WP_005719879.1 DNA gyrase inhibitor YacG -
  ACN6IT_RS08610 coaE 1800868..1801488 (-) 621 WP_014326298.1 dephospho-CoA kinase -
  ACN6IT_RS08615 - 1801503..1802225 (-) 723 WP_014326299.1 prepilin peptidase -
  ACN6IT_RS08620 - 1802225..1803436 (-) 1212 WP_014326300.1 type II secretion system F family protein -
  ACN6IT_RS08625 pilB 1803436..1804821 (-) 1386 WP_016504529.1 GspE/PulE family protein Machinery gene
  ACN6IT_RS08630 pilA 1804821..1805255 (-) 435 WP_005741096.1 prepilin peptidase-dependent pilin Machinery gene
  ACN6IT_RS08635 ampD 1805414..1805980 (+) 567 WP_014326302.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACN6IT_RS08640 rppH 1806566..1807162 (+) 597 WP_005722417.1 RNA pyrophosphohydrolase -
  ACN6IT_RS08645 - 1807165..1807959 (+) 795 WP_014326303.1 sulfite exporter TauE/SafE family protein -
  ACN6IT_RS08650 lgt 1807969..1808772 (+) 804 WP_005751073.1 prolipoprotein diacylglyceryl transferase -
  ACN6IT_RS08655 - 1808778..1809629 (+) 852 WP_005751072.1 thymidylate synthase -
  ACN6IT_RS08660 tadA 1809644..1810144 (+) 501 WP_016504277.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15058.48 Da        Isoelectric Point: 9.1281

>NTDB_id=1106173 ACN6IT_RS08630 WP_005741096.1 1804821..1805255(-) (pilA) [Pasteurella multocida strain 190067]
MKKAIFFSIKKGFTLIELMIVIAIIAILATIAVPSYQNYTKKAAISELLQAAAPYRAEVELCIYNTNSTTNCNAGSHGIR
ADAAASKKYLKAITVKAGVITVTGQGSLEGISYTLTASGNAAQGVSWTVNCGAQSDIFPAGFCA

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1106173 ACN6IT_RS08630 WP_005741096.1 1804821..1805255(-) (pilA) [Pasteurella multocida strain 190067]
ATGAAAAAAGCCATTTTCTTTTCGATTAAAAAAGGGTTTACGCTAATTGAATTAATGATTGTCATTGCCATTATTGCGAT
TTTAGCCACGATTGCCGTGCCATCTTATCAAAATTATACAAAAAAAGCGGCAATCTCTGAATTATTGCAAGCCGCAGCTC
CTTATCGTGCTGAGGTAGAGCTTTGTATCTATAATACAAATAGTACAACGAATTGTAATGCAGGAAGTCATGGTATTCGT
GCTGATGCTGCAGCAAGTAAAAAATATTTAAAAGCCATCACGGTTAAAGCTGGGGTAATTACTGTCACTGGACAAGGGAG
CTTGGAAGGAATTAGCTATACGCTGACAGCGAGTGGTAACGCAGCTCAAGGTGTTTCTTGGACAGTTAATTGTGGTGCTC
AATCTGACATTTTCCCAGCAGGATTTTGCGCATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(42-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

63.194

100

0.632
  pilA Haemophilus influenzae Rd KW20

61.111

100

0.611
  pilA Glaesserella parasuis strain SC1401

52.349

100

0.542
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

36.806

100

0.368
  pilA Vibrio cholerae strain A1552

36.806

100

0.368
  pilA Vibrio cholerae C6706

36.806

100

0.368

Multiple sequence alignment