Detailed information NTG1105974

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: V3C22_RS08895
• Genome accession: NZ_CP183775
• Coordinates: 1805847..1806251 (-)
• Length: 134 a.a.
• NCBI ID: WP_002263438.1
• Uniprot ID: -
• Organism: Streptococcus mutans strain Xc
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1800847..1811251

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V3C22_RS08860 (V3C22_08860)	-	1800987..1801232 (-)	246	WP_002263444.1	helix-turn-helix transcriptional regulator	-
V3C22_RS08865 (V3C22_08865)	tnpA	1801852..1802315 (-)	464	Protein_1699	IS200/IS605 family transposase	-
V3C22_RS08870 (V3C22_08870)	-	1802528..1803727 (-)	1200	WP_002263443.1	acetate kinase	-
V3C22_RS08875 (V3C22_08875)	comYH	1803786..1804739 (-)	954	WP_002264244.1	class I SAM-dependent methyltransferase	Machinery gene
V3C22_RS08880 (V3C22_08880)	comYG	1804794..1805183 (-)	390	WP_226706902.1	competence type IV pilus minor pilin ComGG	Machinery gene
V3C22_RS08885 (V3C22_08885)	comYF	1805161..1805595 (-)	435	WP_002263440.1	competence type IV pilus minor pilin ComGF	Machinery gene
V3C22_RS08890 (V3C22_08890)	comYE	1805582..1805875 (-)	294	WP_002263439.1	competence type IV pilus minor pilin ComGE	Machinery gene
V3C22_RS08895 (V3C22_08895)	comYD	1805847..1806251 (-)	405	WP_002263438.1	competence type IV pilus minor pilin ComGD	Machinery gene
V3C22_RS08900 (V3C22_08900)	comYC	1806238..1806552 (-)	315	WP_002263437.1	competence type IV pilus major pilin ComGC	Machinery gene
V3C22_RS08905 (V3C22_08905)	comYB	1806552..1807583 (-)	1032	WP_255262721.1	competence type IV pilus assembly protein ComGB	Machinery gene
V3C22_RS08910 (V3C22_08910)	comYA	1807519..1808460 (-)	942	WP_002263435.1	competence type IV pilus ATPase ComGA	Machinery gene
V3C22_RS08915 (V3C22_08915)	-	1808590..1808973 (-)	384	WP_002263434.1	DUF1033 family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 15444.77 Da
• Isoelectric Point: 9.5619

>NTDB_id=1105974 V3C22_RS08895 WP_002263438.1 1805847..1806251(-) (comYD) [Streptococcus mutans strain Xc]
MSRIKAFTLIESLVTLAITSFLILSFSGSITQTFAKVEERLFFLSFEHLYRDTQKLSVYQRQDMTLILKSEYISNGVEVL
KIPKDVKLERNKTLHFDQAGGNSSLEKLVFQTSDEKRVTYQLYIGSGQYKKTES

Nucleotide

• Length: 405 bp

>NTDB_id=1105974 V3C22_RS08895 WP_002263438.1 1805847..1806251(-) (comYD) [Streptococcus mutans strain Xc]
ATGTCGCGAATTAAAGCTTTTACGCTTATAGAAAGTTTAGTGACTTTGGCAATTACTAGTTTTTTGATTTTAAGCTTTTC
AGGTAGTATAACTCAAACGTTTGCCAAAGTAGAAGAGCGTCTCTTTTTTCTTTCTTTTGAACATCTTTACCGTGACACGC
AAAAACTTAGTGTTTATCAAAGACAAGATATGACTTTAATATTAAAAAGCGAATATATCTCAAATGGTGTTGAAGTACTT
AAAATCCCTAAGGATGTCAAACTAGAGAGGAATAAAACTTTGCACTTTGATCAGGCAGGAGGAAATTCTTCTTTAGAAAA
ACTTGTTTTTCAAACATCTGATGAAAAAAGAGTTACTTATCAATTATATATAGGAAGTGGTCAGTATAAAAAAACAGAAA
GTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-25)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	100	100	1
comYD	Streptococcus mutans UA159	100	100	1
comYD	Streptococcus gordonii str. Challis substr. CH1	50.388	96.269	0.485
comGD/cglD	Streptococcus mitis NCTC 12261	49.612	96.269	0.478
comGD/cglD	Streptococcus pneumoniae Rx1	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae D39	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae R6	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae TIGR4	48.438	95.522	0.463
comGD/cglD	Streptococcus mitis SK321	48.438	95.522	0.463
comGD	Lactococcus lactis subsp. cremoris KW2	39.394	98.507	0.388