Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   V3C22_RS08875 Genome accession   NZ_CP183775
Coordinates   1803786..1804739 (-) Length   317 a.a.
NCBI ID   WP_002264244.1    Uniprot ID   A0AAX1K2T6
Organism   Streptococcus mutans strain Xc     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1798786..1809739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS08845 (V3C22_08845) proC 1799007..1799777 (+) 771 WP_002263447.1 pyrroline-5-carboxylate reductase -
  V3C22_RS08850 (V3C22_08850) - 1799863..1800525 (-) 663 WP_002273270.1 type II CAAX endopeptidase family protein -
  V3C22_RS08855 (V3C22_08855) - 1800578..1801018 (-) 441 WP_002273271.1 hypothetical protein -
  V3C22_RS08860 (V3C22_08860) - 1800987..1801232 (-) 246 WP_002263444.1 helix-turn-helix transcriptional regulator -
  V3C22_RS08865 (V3C22_08865) tnpA 1801852..1802315 (-) 464 Protein_1699 IS200/IS605 family transposase -
  V3C22_RS08870 (V3C22_08870) - 1802528..1803727 (-) 1200 WP_002263443.1 acetate kinase -
  V3C22_RS08875 (V3C22_08875) comYH 1803786..1804739 (-) 954 WP_002264244.1 class I SAM-dependent methyltransferase Machinery gene
  V3C22_RS08880 (V3C22_08880) comYG 1804794..1805183 (-) 390 WP_226706902.1 competence type IV pilus minor pilin ComGG Machinery gene
  V3C22_RS08885 (V3C22_08885) comYF 1805161..1805595 (-) 435 WP_002263440.1 competence type IV pilus minor pilin ComGF Machinery gene
  V3C22_RS08890 (V3C22_08890) comYE 1805582..1805875 (-) 294 WP_002263439.1 competence type IV pilus minor pilin ComGE Machinery gene
  V3C22_RS08895 (V3C22_08895) comYD 1805847..1806251 (-) 405 WP_002263438.1 competence type IV pilus minor pilin ComGD Machinery gene
  V3C22_RS08900 (V3C22_08900) comYC 1806238..1806552 (-) 315 WP_002263437.1 competence type IV pilus major pilin ComGC Machinery gene
  V3C22_RS08905 (V3C22_08905) comYB 1806552..1807583 (-) 1032 WP_255262721.1 competence type IV pilus assembly protein ComGB Machinery gene
  V3C22_RS08910 (V3C22_08910) comYA 1807519..1808460 (-) 942 WP_002263435.1 competence type IV pilus ATPase ComGA Machinery gene
  V3C22_RS08915 (V3C22_08915) - 1808590..1808973 (-) 384 WP_002263434.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36258.54 Da        Isoelectric Point: 5.2379

>NTDB_id=1105970 V3C22_RS08875 WP_002264244.1 1803786..1804739(-) (comYH) [Streptococcus mutans strain Xc]
MDFEKIEAAYNLLLDNCQRLETQLHTHLYDALIEQNACYLGAEGADDFIKENNKKLRQLNLSKEEWRRSFQFIFIKATQS
QQLQSNHQFTPDSIGFIILYLLEGLTNKSQLDIIEIGSGTGNLAETIVNNSSKSIDYMGIEVDDLLIDLSASIADVLDSS
VHFVQEDAVRPQILKESDVIISDLPVGFYPNDKIAQRYQVAAKLGHTYAHHLLMEQSLKYLKKEGLAIFLAPVDLLTSEQ
SPLLKKWLQNNVTILAVISLPEAIFKQKSNIKSIFVLKKQSQQSLESFVYPLTDLQDPEVLRRFMKNFKKWKEDNVF

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1105970 V3C22_RS08875 WP_002264244.1 1803786..1804739(-) (comYH) [Streptococcus mutans strain Xc]
ATGGATTTTGAAAAAATAGAAGCTGCCTATAACTTACTGTTAGATAATTGTCAAAGGCTGGAAACTCAACTTCATACTCA
CCTTTATGATGCCTTAATTGAGCAAAATGCTTGCTATCTAGGTGCTGAAGGTGCTGATGATTTTATTAAAGAAAATAATA
AAAAACTGCGTCAGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTAGTTTTCAATTTATTTTTATTAAGGCTACTCAAAGT
CAGCAATTACAGTCAAATCACCAATTTACACCAGATAGTATTGGTTTTATTATTCTTTATTTATTGGAAGGTTTAACAAA
TAAGAGTCAGTTAGACATCATTGAAATTGGTTCTGGGACAGGAAATCTTGCAGAGACTATTGTGAATAACAGTTCAAAAA
GCATTGATTATATGGGGATTGAGGTTGACGATCTGTTAATTGATTTATCAGCAAGTATTGCCGATGTATTGGATTCTTCT
GTGCATTTTGTTCAAGAAGATGCAGTGCGGCCTCAGATTTTAAAAGAAAGTGATGTCATTATCAGTGATCTGCCAGTTGG
CTTTTATCCCAATGATAAAATTGCTCAGCGTTATCAGGTTGCAGCCAAGTTAGGACATACTTATGCACATCATCTTTTGA
TGGAGCAATCGCTTAAGTATTTAAAAAAAGAGGGACTTGCTATTTTTTTAGCGCCAGTGGATCTTTTAACTAGTGAGCAG
AGTCCTTTGCTTAAAAAGTGGTTACAGAACAATGTAACTATTTTAGCCGTTATTTCTTTACCTGAGGCAATTTTTAAACA
GAAAAGTAATATAAAGTCAATCTTTGTCTTAAAGAAACAATCGCAACAAAGTTTGGAAAGTTTTGTCTATCCTTTGACAG
ATTTACAAGACCCCGAAGTTTTAAGACGATTTATGAAAAATTTTAAAAAGTGGAAGGAAGATAATGTCTTTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(77-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

99.685

100

0.997
  comYH Streptococcus mutans UA140

99.685

100

0.997

Multiple sequence alignment