Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   V3C22_RS05315 Genome accession   NZ_CP183775
Coordinates   1109215..1109889 (-) Length   224 a.a.
NCBI ID   WP_002264509.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1104215..1114889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS05290 (V3C22_05290) - 1104523..1105800 (-) 1278 WP_226708870.1 pyrimidine-nucleoside phosphorylase -
  V3C22_RS05295 (V3C22_05295) - 1105909..1106505 (-) 597 WP_002302498.1 class I SAM-dependent methyltransferase -
  V3C22_RS05300 (V3C22_05300) coaA 1106601..1107521 (+) 921 WP_002262217.1 type I pantothenate kinase -
  V3C22_RS05305 (V3C22_05305) rpsT 1107575..1107829 (+) 255 WP_011074586.1 30S ribosomal protein S20 -
  V3C22_RS05310 (V3C22_05310) ciaH 1107918..1109225 (-) 1308 WP_002264510.1 three-component system sensor histidine kinase CiaH Regulator
  V3C22_RS05315 (V3C22_05315) ciaR 1109215..1109889 (-) 675 WP_002264509.1 three-component system response regulator CiaR Regulator
  V3C22_RS05320 (V3C22_05320) ciaX 1109940..1110203 (-) 264 WP_002268040.1 three-component system regulator CiaX -
  V3C22_RS05325 (V3C22_05325) - 1110604..1113153 (-) 2550 WP_226708869.1 M1 family aminopeptidase -
  V3C22_RS05330 (V3C22_05330) phoU 1113194..1113847 (-) 654 WP_002262211.1 phosphate signaling complex protein PhoU -
  V3C22_RS05335 (V3C22_05335) pstB 1113879..1114637 (-) 759 WP_002262210.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25417.19 Da        Isoelectric Point: 4.3777

>NTDB_id=1105946 V3C22_RS05315 WP_002264509.1 1109215..1109889(-) (ciaR) [Streptococcus mutans strain Xc]
MIKLLLVEDDLSLSNSIFDFLDDFADVMQVFDGAEGLYEAESGVYDLILLDLMLPEKNGFQVLKELREKGITTPVLIMTA
KEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNENNLTYGELTVDTATNTTMVNGKEVELLGKEFDLLVY
FLQNQNVILPKSQIFDRIWGFDSDTTISVVEVYVSKIRKKLKDTTFGKNLQTLRSVGYILKDAN

Nucleotide


Download         Length: 675 bp        

>NTDB_id=1105946 V3C22_RS05315 WP_002264509.1 1109215..1109889(-) (ciaR) [Streptococcus mutans strain Xc]
ATGATAAAGTTATTATTAGTAGAAGACGATTTGAGTCTATCTAACTCTATCTTTGACTTTCTGGATGATTTTGCTGATGT
CATGCAGGTTTTTGATGGTGCAGAAGGACTGTATGAAGCAGAGAGTGGCGTTTATGATTTGATTCTATTAGACTTAATGC
TTCCTGAAAAAAATGGCTTCCAAGTTTTAAAAGAACTGCGTGAAAAAGGGATAACGACACCTGTTTTGATTATGACAGCT
AAGGAAGGTTTGGATGACAAAGGACACGGTTTTGAATTAGGAGCTGATGATTATCTGACAAAACCATTTTATCTTGAAGA
ATTAAAAATGCGTATTCAGGCCCTCCTCAAACGTTCAGGCAAATTCAACGAAAATAATCTGACTTACGGTGAGTTGACCG
TTGATACAGCAACTAATACAACAATGGTAAATGGAAAAGAAGTTGAACTGCTTGGCAAAGAGTTTGACTTATTAGTTTAT
TTCTTACAAAATCAAAATGTCATTTTACCTAAGTCACAAATTTTTGATCGTATCTGGGGCTTTGATAGCGATACGACAAT
TTCGGTTGTTGAAGTCTATGTTTCTAAAATAAGAAAAAAATTAAAAGATACCACATTTGGAAAGAATTTACAGACATTAC
GCAGTGTAGGATATATTTTGAAGGATGCTAATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

99.554

100

0.996
  ciaR Streptococcus pneumoniae Rx1

87.946

100

0.879
  ciaR Streptococcus pneumoniae D39

87.946

100

0.879
  ciaR Streptococcus pneumoniae R6

87.946

100

0.879
  ciaR Streptococcus pneumoniae TIGR4

87.946

100

0.879
  covR Lactococcus lactis subsp. lactis strain DGCC12653

37.611

100

0.379
  vicR Streptococcus mutans UA159

35.622

100

0.371

Multiple sequence alignment