Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACNYC6_RS14545 Genome accession   NZ_CP183416
Coordinates   3235983..3237476 (-) Length   497 a.a.
NCBI ID   WP_419712849.1    Uniprot ID   -
Organism   Pseudomonas sp. NFX224     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3230983..3242476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNYC6_RS14525 (ACNYC6_14525) - 3232700..3232909 (+) 210 WP_338584109.1 DUF1656 domain-containing protein -
  ACNYC6_RS14530 (ACNYC6_14530) - 3232906..3233793 (+) 888 WP_338584110.1 HlyD family secretion protein -
  ACNYC6_RS14535 (ACNYC6_14535) - 3233790..3235238 (+) 1449 WP_419712847.1 efflux transporter outer membrane subunit -
  ACNYC6_RS14540 (ACNYC6_14540) - 3235332..3235967 (+) 636 WP_419712848.1 NADH:ubiquinone oxidoreductase subunit N -
  ACNYC6_RS14545 (ACNYC6_14545) comM 3235983..3237476 (-) 1494 WP_419712849.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACNYC6_RS14550 (ACNYC6_14550) - 3237655..3237915 (-) 261 WP_419712850.1 accessory factor UbiK family protein -
  ACNYC6_RS14555 (ACNYC6_14555) glnK 3238335..3238673 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  ACNYC6_RS14560 (ACNYC6_14560) - 3238709..3240046 (+) 1338 WP_419712851.1 ammonium transporter -
  ACNYC6_RS14565 (ACNYC6_14565) - 3240261..3240686 (+) 426 WP_419712852.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACNYC6_RS14570 (ACNYC6_14570) sutA 3240788..3241111 (+) 324 WP_419712853.1 transcriptional regulator SutA -
  ACNYC6_RS14575 (ACNYC6_14575) - 3241219..3241926 (-) 708 WP_419712854.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53000.04 Da        Isoelectric Point: 7.6879

>NTDB_id=1105653 ACNYC6_RS14545 WP_419712849.1 3235983..3237476(-) (comM) [Pseudomonas sp. NFX224]
MSLSIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRSLMVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPYVSDGLMHASKPYPDLSEVQGQQAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
CEALEVAAIQSVASCVPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPTPKP
GEDSASAAALVADARERQQKRQGCANAFLDLPGLRRHCTLSTADEHWLETACERLTLSLRSAHRLLKVARTLADLEQVDG
ITREHLAEALQYRPATQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1105653 ACNYC6_RS14545 WP_419712849.1 3235983..3237476(-) (comM) [Pseudomonas sp. NFX224]
ATGTCCCTCTCCATCGTCCACAGTCGCGCCCAGGTGGGTGTGGAAGCGCCCGCCGTTACTGTCGAAGTCCATCTGGCTAA
CGGCTTGCCATCGCTGACCATGGTTGGCCTGCCCGAGGCGGCAGTGAAGGAGAGCAAGGACCGGGTGCGCAGTGCGATCA
TTAATTCAGGGCTGCAATTTCCGGCGCGGCGGATCACGTTGAATCTGGCGCCGGCGGATTTGCCCAAGGACGGTGGGCGG
TTCGATCTGGCGATTGCGTTGGGGATTCTTTCCGCCAGTGTTCAGGTGCCGACGCTGACGCTCGATGATGTGGAATGTCT
GGGTGAGTTGGCGCTGTCGGGCGCGGTTCGGGCAGTACGCGGCGTTTTACCGGCAGCACTGGCTGCGCGCAAGGCCGGGC
GGTCGCTGATGGTGCCGCGGGCGAATGCCGAGGAGGCGTGCCTGGCGTCGGGTTTGAAGGTGATTGCGGTGGACCATCTG
CTGGAAGCCGTGGCCCATTTCAATGGGCACACGCCGGTTGAGCCGTATGTTTCCGATGGCTTGATGCATGCCAGCAAACC
TTATCCCGACCTGAGTGAAGTGCAGGGTCAGCAAGCCGCCAAACGCGCATTGCTGATTGCGGCGGCCGGTGCGCATAACC
TTCTGTTTAGTGGGCCGCCGGGGACGGGTAAAACGTTACTGGCGAGTCGTCTGCCAGGGCTGTTGCCTCCGCTTGCCGAA
TGCGAAGCGCTGGAAGTGGCGGCGATCCAGTCGGTCGCCAGTTGCGTACCGTTGACCCACTGGCCGCAACGTCCGTTTCG
CCAGCCACATCACTCCGCCTCAGGCCCGGCGTTGGTGGGGGGCAGCTCCAAGCCACAACCCGGCGAAATTACCCTGGCCC
ATCACGGTGTGCTGTTCCTCGATGAGCTGCCGGAATTCGATCGAAAGGTGTTGGAAGTACTCAGGGAGCCATTGGAGTCC
GGGCATATCGTGATTTCCCGGGCCAAGGACCGCGTTCGATTTCCCGCGCGTTTTCAGTTGGTCGCAGCCATGAACCCGTG
CCCCTGTGGATATCTTGGCGAGCCGAGCGGCAAGTGTTCTTGCACCCCGGACATGGTGCAGCGGTACCGTAACAAGCTGT
CGGGACCGTTACTGGACCGGATCGATTTGCACCTGACGGTTGCTCGGGAAGCGACGGCATTGAACCCGACGCCGAAACCG
GGTGAAGACAGCGCCAGCGCTGCCGCGTTGGTGGCCGACGCCCGTGAACGGCAACAGAAGCGCCAGGGCTGCGCGAATGC
CTTCCTGGATTTGCCGGGACTGCGTCGTCACTGCACCTTATCCACAGCCGATGAACACTGGCTGGAAACGGCGTGTGAAC
GATTGACCCTGTCGTTGCGTTCGGCGCATCGGCTGCTCAAGGTGGCGCGCACATTGGCGGATCTTGAGCAGGTAGACGGG
ATCACGCGGGAGCATCTGGCCGAGGCATTGCAGTATCGGCCGGCGACGCAGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.747

99.598

0.545
  comM Vibrio cholerae strain A1552

54.343

99.598

0.541
  comM Haemophilus influenzae Rd KW20

53.507

100

0.537
  comM Glaesserella parasuis strain SC1401

52.6

100

0.529
  comM Legionella pneumophila str. Paris

50.402

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.402

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.6

100

0.459

Multiple sequence alignment