Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACN429_RS20580 Genome accession   NZ_CP183397
Coordinates   4399802..4402051 (-) Length   749 a.a.
NCBI ID   WP_377709903.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain CCSM P719     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4394802..4407051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN429_RS20565 (ACN429_20565) - 4396514..4398112 (-) 1599 WP_377709906.1 AAA family ATPase -
  ACN429_RS20570 (ACN429_20570) aroB 4398131..4399225 (-) 1095 WP_312376348.1 3-dehydroquinate synthase -
  ACN429_RS20575 (ACN429_20575) aroK 4399278..4399796 (-) 519 WP_007161627.1 shikimate kinase AroK -
  ACN429_RS20580 (ACN429_20580) pilQ 4399802..4402051 (-) 2250 WP_377709903.1 type IV pilus secretin PilQ Machinery gene
  ACN429_RS20585 (ACN429_20585) - 4402052..4402570 (-) 519 WP_027602907.1 pilus assembly protein PilP -
  ACN429_RS20590 (ACN429_20590) pilO 4402567..4403220 (-) 654 WP_007161624.1 type 4a pilus biogenesis protein PilO -
  ACN429_RS20595 (ACN429_20595) - 4403217..4403807 (-) 591 WP_377709900.1 PilN domain-containing protein -
  ACN429_RS20600 (ACN429_20600) pilM 4403808..4404872 (-) 1065 WP_027598915.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 749 a.a.        Molecular weight: 79934.69 Da        Isoelectric Point: 8.5618

>NTDB_id=1105549 ACN429_RS20580 WP_377709903.1 4399802..4402051(-) (pilQ) [Pseudomonas oryzihabitans strain CCSM P719]
MGGASTVNTTIAGRLGLGLALLLSSLACQALAADLQALNVASLPGDRIELKLTFDQPVPVPKGYTIEQPARIALDLPGVA
NKLGTKSRELGNGNARSVTVVEAGNRTRLIINLTNLASYDTRADGRNLFVTIGGTAGRQTASAQANLTPNLPRAAAPTTV
TAPSSAPLPGAVARTPLPPTQATSTVAAMTAPRPQLRGKAIRHIDFQRGPQGEGNVVIDLSETGINPDIQEQGGKIRLTF
AGTQLPEELRVRLDVKDFATPVQFVNASADSGGASIVIEPTGTYDYLAYQTNNRLTLSVKPLTTEEKEKRAADRFTYTGE
KLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGNITLRLQNVPWDQALDLILKTKGLDKRQIGNVLLVAPADEIAARER
QELESQKQIQQLAPLRRDLIQVNYAKAADIAKLFQSVTSADKTADERGSISVDERTNSIIAYQTQNRLDELRRIVSQLDI
PVRQVMIEARLVEANVDYSKQLGVRWGGNASSGNFAVYGKDGATTVDPTTGQAFLPGTSTVGNFTSTNGVAPTPFVDMGV
SGSTSGIGIGFMVGGKMLDLQLSALQSSGNGEIISQPKVVTSDKETAKILRGTEIPYQEASSSGATSTSFKQAALSLEVT
PQITPDNRIIMEVKVNKDAPDYQNALNGVPPISKNEVNAKVLVSDGETIVLGGVFSNTQTKSTTKVPMLGDIPYVGRLFR
RDSVTDSKVELLIFLTPRIMNNQAIAVGR

Nucleotide


Download         Length: 2250 bp        

>NTDB_id=1105549 ACN429_RS20580 WP_377709903.1 4399802..4402051(-) (pilQ) [Pseudomonas oryzihabitans strain CCSM P719]
ATGGGCGGGGCGAGCACTGTGAATACTACTATAGCGGGACGACTGGGGCTGGGCCTGGCCCTGCTGCTGAGCAGCCTGGC
CTGCCAGGCTCTGGCAGCCGATCTGCAGGCCTTGAACGTCGCCTCCCTGCCCGGGGATCGCATCGAACTCAAGCTGACCT
TCGATCAGCCGGTGCCGGTGCCCAAGGGCTACACCATCGAGCAGCCGGCGCGCATCGCCCTGGACCTGCCCGGCGTCGCC
AACAAGCTCGGTACCAAGAGCCGTGAGCTGGGCAATGGCAATGCCCGCAGCGTGACGGTGGTCGAGGCGGGCAACCGCAC
CCGCCTGATCATCAACCTCACCAATCTGGCCAGCTACGACACCCGGGCCGACGGTCGCAACCTGTTCGTCACCATCGGGG
GCACCGCCGGTCGCCAGACGGCCAGCGCCCAGGCCAACCTGACGCCCAACCTGCCGCGCGCCGCTGCGCCGACCACCGTG
ACCGCGCCGTCGTCCGCTCCCTTGCCCGGCGCGGTCGCCCGCACGCCGCTGCCGCCGACCCAGGCCACCTCTACCGTGGC
GGCCATGACCGCGCCGCGGCCGCAATTGCGCGGCAAGGCGATCCGCCATATCGATTTCCAGCGTGGGCCCCAGGGTGAGG
GCAACGTGGTCATCGACCTGAGCGAGACCGGCATCAATCCGGACATCCAGGAGCAGGGCGGCAAGATTCGCCTGACCTTT
GCCGGTACCCAGCTGCCTGAAGAGCTGCGGGTACGGCTGGACGTCAAGGATTTCGCCACCCCGGTGCAGTTCGTCAACGC
CTCCGCTGACAGCGGCGGGGCGTCCATCGTCATCGAGCCGACCGGTACCTACGACTACCTGGCCTACCAGACCAACAACC
GTCTGACCCTGAGCGTCAAGCCGCTCACCACCGAGGAAAAGGAAAAGCGCGCAGCCGATCGCTTCACCTATACCGGCGAG
AAGCTGTCGCTGAACTTCCAGGACATCGATGTCCGCTCGGTGCTGCAGCTGATCGCCGACTTCACCAATCTCAACCTGGT
GGCGAGCGACACCGTGCAGGGCAACATCACCCTGCGCCTGCAGAACGTGCCCTGGGACCAGGCGCTGGATCTGATCCTCA
AGACCAAGGGGCTGGACAAGCGCCAGATCGGCAACGTGCTGCTGGTGGCCCCGGCCGACGAGATCGCCGCCCGCGAACGT
CAGGAGCTGGAGTCCCAGAAGCAAATCCAGCAACTGGCCCCCTTGCGTCGCGACCTGATCCAGGTCAACTACGCCAAGGC
CGCCGACATCGCCAAGCTGTTCCAGTCGGTGACCAGTGCCGACAAGACCGCCGACGAGCGTGGTTCCATCTCGGTGGACG
AACGCACCAACAGCATCATCGCCTACCAGACCCAGAATCGCCTGGACGAACTACGCCGCATCGTCTCCCAGCTGGACATC
CCGGTGCGCCAGGTAATGATCGAGGCGCGCCTGGTGGAGGCCAACGTCGACTACAGCAAGCAGCTGGGCGTGCGCTGGGG
CGGTAACGCCAGTTCGGGCAACTTCGCGGTCTATGGCAAGGACGGCGCCACCACGGTCGACCCCACTACCGGTCAGGCCT
TCCTGCCGGGTACCAGTACCGTGGGTAACTTCACCTCGACCAACGGCGTCGCGCCCACGCCTTTCGTCGACATGGGCGTT
TCCGGCAGCACCTCGGGCATCGGCATCGGCTTCATGGTCGGTGGCAAGATGCTCGACCTGCAGCTGTCGGCCCTGCAGTC
CAGTGGCAATGGCGAGATCATCTCCCAGCCCAAGGTGGTGACCTCGGACAAGGAGACCGCCAAGATCCTGCGCGGTACCG
AGATCCCCTACCAGGAAGCCAGCTCCAGCGGTGCCACCAGCACCAGCTTCAAGCAGGCCGCCCTGTCGCTGGAGGTCACA
CCGCAGATTACCCCGGACAACCGCATCATCATGGAGGTCAAGGTCAACAAGGATGCCCCTGACTACCAGAATGCACTCAA
CGGCGTACCGCCGATCAGCAAGAACGAGGTCAATGCCAAGGTACTGGTGAGCGATGGCGAGACCATCGTACTGGGCGGGG
TGTTCTCCAACACCCAGACCAAGTCCACCACCAAGGTGCCGATGCTGGGCGACATTCCCTATGTCGGCCGACTGTTCCGC
CGGGATTCGGTCACCGACAGCAAAGTCGAGCTGCTGATCTTCCTCACGCCGCGTATCATGAACAACCAGGCGATAGCGGT
TGGTCGATGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(584-740)

AMIN domain (AMIN)

(47-132)

Bacterial type II/III secretion system short domain (Secretin_N)

(420-484)

Secretin and TonB N terminus short domain (STN)

(345-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

70.149

98.398

0.69
  comQ Acinetobacter baylyi ADP1

40.8

100

0.409
  pilQ Acinetobacter baumannii D1279779

39.422

100

0.401
  pilQ Acinetobacter baumannii strain A118

39.422

100

0.401

Multiple sequence alignment