Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACNVED_RS13430 Genome accession   NZ_CP183303
Coordinates   3090695..3091765 (+) Length   356 a.a.
NCBI ID   WP_419419496.1    Uniprot ID   -
Organism   Legionella sp. D16C41     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3085695..3096765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNVED_RS13405 (ACNVED_13405) - 3085822..3086562 (-) 741 WP_419419492.1 CPBP family intramembrane glutamate endopeptidase -
  ACNVED_RS13410 (ACNVED_13410) rsmB 3086552..3087841 (-) 1290 WP_419419493.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ACNVED_RS13415 (ACNVED_13415) fmt 3087976..3088920 (-) 945 WP_419419494.1 methionyl-tRNA formyltransferase -
  ACNVED_RS13420 (ACNVED_13420) def 3088920..3089435 (-) 516 WP_419421200.1 peptide deformylase -
  ACNVED_RS13425 (ACNVED_13425) - 3089655..3090698 (+) 1044 WP_419419495.1 LysM peptidoglycan-binding domain-containing protein -
  ACNVED_RS13430 (ACNVED_13430) dprA 3090695..3091765 (+) 1071 WP_419419496.1 DNA-processing protein DprA Machinery gene
  ACNVED_RS13435 (ACNVED_13435) - 3091767..3092195 (+) 429 WP_419419497.1 DUF494 family protein -
  ACNVED_RS13440 (ACNVED_13440) topA 3092487..3094769 (+) 2283 WP_419419498.1 type I DNA topoisomerase -
  ACNVED_RS13445 (ACNVED_13445) - 3094820..3095137 (-) 318 WP_419419499.1 DUF2845 domain-containing protein -
  ACNVED_RS13450 (ACNVED_13450) - 3095283..3096176 (-) 894 WP_419419500.1 phosphotransferase -
  ACNVED_RS13455 (ACNVED_13455) - 3096166..3096603 (-) 438 WP_419421201.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38833.79 Da        Isoelectric Point: 7.0003

>NTDB_id=1105189 ACNVED_RS13430 WP_419419496.1 3090695..3091765(+) (dprA) [Legionella sp. D16C41]
MNNKHYLLALNRIPSIGPQTIKKLLAHWPSLKEMFALSQEQLQNAGLPFKLAYAIKKFDFAELDLDLNWESQPNHHLISW
EDEQYPSLLNQIYDAPPILYAIGDLTCLQHLTIAIVGTRKPSIAGSQNAWQFAFELATNQVTIVSGLALGIDAQAHKGCL
AANGRTIAVLGTGVDCIYPKSHRLLANQIIDNGLLISEFPLKSQPTAGHFPRRNRIISGLSLAILVVEAAIKSGSLITAR
LALEQNREVMAVPGSINNSQARGCNYLLQQGAKLVISINDILSELGIEHGSPNTKESSINLATNHKNLVKCLGFETVTID
QIIQQSGLGIDEVISNLTELELQGIIKAVPGGYIRC

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1105189 ACNVED_RS13430 WP_419419496.1 3090695..3091765(+) (dprA) [Legionella sp. D16C41]
ATGAATAACAAGCACTATTTACTCGCTCTTAATCGTATCCCTAGTATTGGGCCGCAAACAATAAAAAAATTACTAGCTCA
TTGGCCTTCCTTAAAAGAGATGTTTGCCTTATCACAAGAACAGTTACAAAACGCAGGCCTACCATTTAAATTAGCTTATG
CAATTAAAAAATTTGATTTTGCTGAGCTTGACTTAGATTTAAACTGGGAAAGCCAACCAAATCACCATCTTATTAGTTGG
GAAGATGAGCAATACCCGTCGCTACTTAACCAGATTTATGATGCCCCACCTATTTTGTATGCCATAGGTGATTTAACTTG
TTTGCAACATTTAACAATAGCAATCGTTGGTACACGCAAACCTTCTATAGCTGGCTCCCAAAATGCGTGGCAATTCGCTT
TTGAGCTGGCTACTAATCAAGTTACTATTGTAAGCGGCTTAGCGCTTGGTATTGATGCTCAAGCTCATAAAGGTTGCCTT
GCTGCTAATGGAAGAACAATTGCTGTACTTGGGACAGGAGTAGATTGCATTTATCCTAAAAGTCATAGGCTTTTAGCCAA
TCAAATTATTGATAATGGCTTATTAATTTCTGAATTTCCATTAAAAAGCCAACCAACGGCTGGACATTTCCCTCGTAGAA
ACCGTATAATAAGCGGTTTATCTTTAGCCATACTGGTCGTAGAAGCTGCAATCAAAAGTGGTTCATTGATTACGGCCCGT
TTAGCTTTAGAGCAAAATCGAGAGGTTATGGCAGTTCCTGGTTCGATTAATAATTCACAAGCAAGAGGCTGTAATTATTT
ATTACAACAGGGGGCAAAACTGGTAATATCAATTAATGATATCCTTAGCGAGTTAGGCATTGAACATGGTTCTCCTAATA
CTAAAGAATCCTCAATTAATCTTGCAACAAATCATAAAAACCTAGTAAAGTGCTTAGGCTTTGAAACAGTAACTATTGAT
CAAATTATTCAACAAAGCGGATTAGGTATTGATGAAGTTATAAGTAATTTAACAGAATTAGAATTACAAGGTATTATTAA
AGCAGTGCCTGGTGGCTATATAAGGTGTTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(296-352)

DNA recombination-mediator protein A (DNA_processg_A)

(74-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

60.784

100

0.61
  dprA Vibrio campbellii strain DS40M4

43.38

99.719

0.433
  dprA Vibrio cholerae strain A1552

42.105

100

0.427
  dprA Glaesserella parasuis strain SC1401

38.503

100

0.404
  dprA Neisseria gonorrhoeae strain FA1090

35.567

100

0.388
  dprA Neisseria gonorrhoeae MS11

35.567

100

0.388
  dprA Haemophilus influenzae Rd KW20

39.595

97.191

0.385

Multiple sequence alignment