Detailed information NTG1105152

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACN0NO_RS14765
• Genome accession: NZ_CP183298
• Coordinates: 3208474..3209859 (+)
• Length: 461 a.a.
• NCBI ID: WP_068853796.1
• Uniprot ID: A0AAP5AH03
• Organism: Stenotrophomonas rhizophila strain SJ-3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3210350..3239910	3208474..3209859	flank	491

Gene organization within MGE regions

Location: 3208474..3239910

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN0NO_RS14765 (ACN0NO_14765)	pilR	3208474..3209859 (+)	1386	WP_068853796.1	sigma-54-dependent transcriptional regulator	Regulator
ACN0NO_RS14770 (ACN0NO_14770)	-	3210350..3210898 (+)	549	WP_419403255.1	SymE family type I addiction module toxin	-
ACN0NO_RS14775 (ACN0NO_14775)	-	3211022..3211504 (-)	483	WP_419403256.1	hypothetical protein	-
ACN0NO_RS14780 (ACN0NO_14780)	-	3211712..3212074 (-)	363	WP_419403257.1	hypothetical protein	-
ACN0NO_RS14785 (ACN0NO_14785)	-	3212270..3212962 (-)	693	WP_419403258.1	hypothetical protein	-
ACN0NO_RS14790 (ACN0NO_14790)	-	3213664..3213843 (-)	180	WP_419403259.1	hypothetical protein	-
ACN0NO_RS14795 (ACN0NO_14795)	-	3214162..3219000 (-)	4839	WP_419403260.1	RHS repeat-associated core domain-containing protein	-
ACN0NO_RS14800 (ACN0NO_14800)	-	3219401..3219844 (-)	444	WP_419403261.1	hypothetical protein	-
ACN0NO_RS14805 (ACN0NO_14805)	-	3219867..3224531 (-)	4665	WP_419403262.1	RHS repeat-associated core domain-containing protein	-
ACN0NO_RS14810 (ACN0NO_14810)	-	3224849..3227896 (-)	3048	WP_419403263.1	spermine synthase	-
ACN0NO_RS14815 (ACN0NO_14815)	pilB	3228172..3229899 (-)	1728	WP_095363637.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACN0NO_RS14820 (ACN0NO_14820)	pilA	3229953..3230360 (-)	408	WP_419403264.1	pilin	Machinery gene
ACN0NO_RS14825 (ACN0NO_14825)	pilA	3230460..3230867 (-)	408	WP_095363635.1	pilin	Machinery gene
ACN0NO_RS14830 (ACN0NO_14830)	pilC	3231224..3232480 (+)	1257	WP_419403265.1	type II secretion system F family protein	Machinery gene
ACN0NO_RS14835 (ACN0NO_14835)	pilD	3232487..3233350 (+)	864	WP_068853817.1	prepilin peptidase	Machinery gene
ACN0NO_RS14840 (ACN0NO_14840)	coaE	3233358..3233966 (+)	609	WP_419403266.1	dephospho-CoA kinase	-
ACN0NO_RS14845 (ACN0NO_14845)	-	3234056..3235420 (-)	1365	WP_095363631.1	sensor histidine kinase	-
ACN0NO_RS14850 (ACN0NO_14850)	-	3235383..3236060 (-)	678	WP_017356179.1	response regulator transcription factor	-
ACN0NO_RS14855 (ACN0NO_14855)	-	3236068..3236538 (-)	471	WP_095363630.1	hypothetical protein	-
ACN0NO_RS14860 (ACN0NO_14860)	rimK	3236771..3237676 (-)	906	WP_249833010.1	30S ribosomal protein S6--L-glutamate ligase	-
ACN0NO_RS14865 (ACN0NO_14865)	-	3237895..3238674 (+)	780	WP_095363628.1	histidine phosphatase family protein	-
ACN0NO_RS14870 (ACN0NO_14870)	-	3238676..3239548 (+)	873	WP_093533699.1	NAD(P)H-hydrate dehydratase	-
ACN0NO_RS14875 (ACN0NO_14875)	-	3239551..3239910 (-)	360	WP_210130949.1	nuclear transport factor 2 family protein	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 49964.38 Da
• Isoelectric Point: 6.7842

>NTDB_id=1105152 ACN0NO_RS14765 WP_068853796.1 3208474..3209859(+) (pilR) [Stenotrophomonas rhizophila strain SJ-3]
MNENRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVTEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNTERPAPPPLTSDTTARLLGESAAMDGLRATITKVAR
SQAPVYILGESGVGKELVARTIHGQSARAAGPFVPVNCGAIPSELMESEFFGHKKGSFSGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSIRPVGAATEVPVDVRILSATHKDLGDLVEDGRFRHDLYYRINVIELRVPPLRERRSDLP
QLAASILARLARTHGRPTPLLAPSALEAMGTYHFPGNVRELENILERALALAEGDTIGASDLRLPQQGVPRHGGAPVAAH
EEAVVDLPAGSGALPSYIEQMERTAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGMD

Nucleotide

• Length: 1386 bp

>NTDB_id=1105152 ACN0NO_RS14765 WP_068853796.1 3208474..3209859(+) (pilR) [Stenotrophomonas rhizophila strain SJ-3]
ATGAACGAAAACCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTACTGACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCGGCCAACCTTGCCGAAGCGCGCGAGCTGCTGGCCAGCAACCCCTACGACCTGTGCATCA
CCGACATGCGGCTGCCCGACGGCAACGGCATCGAGCTGGTCACTGAAATCGCCCAGCACTACCCGCGCACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGTTGAAGGCCGGCGCGTTTGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGGCTGGTCAAGCATGCGCTGGAACTCAACAATACCGAACGCCCTGCCCCGCCGCCGCTGA
CGAGCGACACCACCGCGCGGCTGCTGGGCGAATCGGCGGCGATGGATGGCCTGCGCGCCACCATCACCAAGGTCGCCCGC
AGCCAGGCGCCGGTGTACATCCTGGGCGAATCGGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGGCCAGAGCGC
GCGCGCGGCCGGCCCGTTCGTGCCGGTGAACTGCGGCGCCATTCCATCGGAACTGATGGAGAGCGAATTCTTCGGGCACA
AGAAGGGCAGCTTCAGCGGCGCCCATGCCGACAAGCCGGGCCTGTTCCAGGCCGCGCATGGCGGCACCCTGTTCCTGGAT
GAAGTGGCCGAACTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGTGCGATCCAGGAAAAGTCGATCCGCCCGGTGGGCGC
GGCCACCGAAGTGCCGGTGGATGTGCGCATTCTTTCCGCTACGCACAAGGACCTTGGCGACCTGGTGGAAGATGGGCGGT
TCCGCCACGACCTGTATTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGTAGCGATCTGCCG
CAGCTGGCAGCTTCGATCCTGGCCCGGTTGGCCCGTACGCATGGGCGGCCTACGCCGTTGCTGGCGCCGTCGGCGCTTGA
AGCGATGGGCACGTATCACTTCCCGGGCAACGTGCGCGAGCTGGAAAACATTCTGGAGCGTGCATTGGCGCTGGCCGAGG
GTGACACCATCGGGGCTAGCGATCTTCGGTTGCCGCAGCAGGGTGTGCCGCGGCATGGTGGGGCGCCGGTGGCGGCGCAT
GAAGAAGCGGTGGTCGATCTGCCGGCGGGGAGCGGCGCGCTGCCTTCTTATATCGAGCAGATGGAACGCACCGCGATCCA
GAAGGCGCTGGAAGAGAACCGCTGGAACAAGACGAGAACTGCCGCGCAGTTGGGCATTACGTTCCGCGCGTTGCGCTACA
AGCTGAAAAAGCTGGGAATGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (141-307)

• Bacterial regulatory protein, Fis family (HTH_8) (418-458)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.227	99.349	0.618
pilR	Acinetobacter baumannii strain A118	48.712	100	0.492
luxO	Vibrio cholerae strain A1552	36.842	98.915	0.364