Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACN08L_RS11955 Genome accession   NZ_CP183285
Coordinates   2420988..2421281 (-) Length   97 a.a.
NCBI ID   WP_419237952.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sr3.21     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2415988..2426281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08L_RS11930 (ACN08L_11925) - 2416405..2417619 (+) 1215 WP_305842161.1 pyridoxal phosphate-dependent aminotransferase -
  ACN08L_RS11935 (ACN08L_11930) yfbR 2417774..2418358 (+) 585 WP_008987653.1 5'-deoxynucleotidase -
  ACN08L_RS11940 (ACN08L_11935) - 2418358..2419725 (+) 1368 WP_419237949.1 anti-phage deoxyguanosine triphosphatase -
  ACN08L_RS11945 (ACN08L_11940) - 2419776..2420393 (-) 618 WP_419237950.1 tRNA-uridine aminocarboxypropyltransferase -
  ACN08L_RS11950 (ACN08L_11945) rrtA 2420404..2420949 (+) 546 WP_419237951.1 rhombosortase -
  ACN08L_RS11955 (ACN08L_11950) comEA 2420988..2421281 (-) 294 WP_419237952.1 ComEA family DNA-binding protein Machinery gene
  ACN08L_RS11960 (ACN08L_11955) ppiD 2421421..2423313 (-) 1893 WP_419237953.1 peptidylprolyl isomerase -
  ACN08L_RS11965 (ACN08L_11960) hupB 2423728..2424000 (-) 273 WP_008987659.1 nucleoid-associated protein HU-beta -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10550.16 Da        Isoelectric Point: 7.2013

>NTDB_id=1105006 ACN08L_RS11955 WP_419237952.1 2420988..2421281(-) (comEA) [Photobacterium leiognathi subsp. mandapamensis strain Sr3.21]
MYSYRLFKVIALASGLALVPLSHADENTHEGIVKTVNINEANVEQLDILLDGIGAEKARAIVDYRNANGKFASADDLVKV
KGIGKATVEKNRKIIEL

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1105006 ACN08L_RS11955 WP_419237952.1 2420988..2421281(-) (comEA) [Photobacterium leiognathi subsp. mandapamensis strain Sr3.21]
ATGTACTCATACCGTTTATTTAAAGTTATCGCTTTAGCAAGTGGGTTAGCGTTGGTACCGCTAAGTCATGCTGATGAAAA
TACGCATGAAGGGATCGTTAAAACTGTGAATATCAATGAAGCAAATGTTGAGCAGCTTGATATTCTACTAGATGGTATTG
GGGCAGAGAAAGCACGAGCGATTGTTGATTATCGTAATGCTAACGGTAAGTTTGCGAGTGCGGATGATTTAGTTAAAGTG
AAAGGGATTGGTAAGGCAACGGTTGAGAAAAACCGCAAGATCATTGAGTTGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(35-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

53.261

94.845

0.505
  comEA Vibrio cholerae strain A1552

53.261

94.845

0.505
  comEA Vibrio campbellii strain DS40M4

52.5

82.474

0.433
  comE1/comEA Haemophilus influenzae Rd KW20

40

100

0.433
  comEA Vibrio parahaemolyticus RIMD 2210633

50

80.412

0.402
  comEA Acinetobacter baylyi ADP1

51.389

74.227

0.381

Multiple sequence alignment