Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACNM63_RS11860 Genome accession   NZ_CP183191
Coordinates   2467481..2467789 (-) Length   102 a.a.
NCBI ID   WP_014418376.1    Uniprot ID   -
Organism   Bacillus velezensis strain QC02     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2462481..2472789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNM63_RS11810 (ACNM63_11810) sinR 2462644..2462979 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACNM63_RS11815 (ACNM63_11815) tasA 2463027..2463812 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  ACNM63_RS11820 (ACNM63_11820) sipW 2463877..2464461 (-) 585 WP_012117977.1 signal peptidase I SipW -
  ACNM63_RS11825 (ACNM63_11825) tapA 2464433..2465104 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  ACNM63_RS11830 (ACNM63_11830) - 2465363..2465692 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  ACNM63_RS11835 (ACNM63_11835) - 2465733..2465912 (-) 180 WP_003153093.1 YqzE family protein -
  ACNM63_RS11840 (ACNM63_11840) comGG 2465969..2466346 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACNM63_RS11845 (ACNM63_11845) comGF 2466347..2466742 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  ACNM63_RS11850 (ACNM63_11850) comGE 2466756..2467070 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACNM63_RS11855 (ACNM63_11855) comGD 2467054..2467491 (-) 438 WP_095061019.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACNM63_RS11860 (ACNM63_11860) comGC 2467481..2467789 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene
  ACNM63_RS11865 (ACNM63_11865) comGB 2467794..2468831 (-) 1038 WP_053284924.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACNM63_RS11870 (ACNM63_11870) comGA 2468818..2469888 (-) 1071 WP_014418378.1 competence type IV pilus ATPase ComGA Machinery gene
  ACNM63_RS11875 (ACNM63_11875) - 2470081..2471031 (-) 951 WP_014418379.1 magnesium transporter CorA family protein -
  ACNM63_RS11880 (ACNM63_11880) - 2471177..2472478 (+) 1302 WP_029973873.1 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11400.33 Da        Isoelectric Point: 6.4507

>NTDB_id=1104382 ACNM63_RS11860 WP_014418376.1 2467481..2467789(-) (comGC) [Bacillus velezensis strain QC02]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQRKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=1104382 ACNM63_RS11860 WP_014418376.1 2467481..2467789(-) (comGC) [Bacillus velezensis strain QC02]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATTGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCGTAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGTGGCGGAGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

76.289

95.098

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402

Multiple sequence alignment