Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACNM63_RS11810 Genome accession   NZ_CP183191
Coordinates   2462644..2462979 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain QC02     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2457644..2467979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNM63_RS11790 (ACNM63_11790) gcvT 2458250..2459350 (-) 1101 WP_061890721.1 glycine cleavage system aminomethyltransferase GcvT -
  ACNM63_RS11795 (ACNM63_11795) - 2459774..2461444 (+) 1671 WP_021494309.1 DEAD/DEAH box helicase -
  ACNM63_RS11800 (ACNM63_11800) - 2461466..2462260 (+) 795 WP_014418368.1 YqhG family protein -
  ACNM63_RS11805 (ACNM63_11805) sinI 2462437..2462610 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  ACNM63_RS11810 (ACNM63_11810) sinR 2462644..2462979 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACNM63_RS11815 (ACNM63_11815) tasA 2463027..2463812 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  ACNM63_RS11820 (ACNM63_11820) sipW 2463877..2464461 (-) 585 WP_012117977.1 signal peptidase I SipW -
  ACNM63_RS11825 (ACNM63_11825) tapA 2464433..2465104 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  ACNM63_RS11830 (ACNM63_11830) - 2465363..2465692 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  ACNM63_RS11835 (ACNM63_11835) - 2465733..2465912 (-) 180 WP_003153093.1 YqzE family protein -
  ACNM63_RS11840 (ACNM63_11840) comGG 2465969..2466346 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACNM63_RS11845 (ACNM63_11845) comGF 2466347..2466742 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  ACNM63_RS11850 (ACNM63_11850) comGE 2466756..2467070 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACNM63_RS11855 (ACNM63_11855) comGD 2467054..2467491 (-) 438 WP_095061019.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACNM63_RS11860 (ACNM63_11860) comGC 2467481..2467789 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1104378 ACNM63_RS11810 WP_003153104.1 2462644..2462979(+) (sinR) [Bacillus velezensis strain QC02]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1104378 ACNM63_RS11810 WP_003153104.1 2462644..2462979(+) (sinR) [Bacillus velezensis strain QC02]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment