Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACAK35_RS17080 | Genome accession | NZ_AP031576 |
| Coordinates | 3594794..3595654 (+) | Length | 286 a.a. |
| NCBI ID | WP_001152277.1 | Uniprot ID | A0A009HWK1 |
| Organism | Acinetobacter baumannii strain JUNP402 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3589794..3600654
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACAK35_RS17060 (JUNP402_3407) | secG | 3590399..3590728 (-) | 330 | WP_000555570.1 | preprotein translocase subunit SecG | - |
| ACAK35_RS17065 (JUNP402_3408) | tpiA | 3590741..3591535 (-) | 795 | WP_000016931.1 | triose-phosphate isomerase | - |
| ACAK35_RS17070 (JUNP402_3409) | pilB | 3591826..3593538 (+) | 1713 | WP_001274987.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACAK35_RS17075 (JUNP402_3410) | pilC | 3593568..3594794 (+) | 1227 | WP_000279216.1 | type II secretion system F family protein | Machinery gene |
| ACAK35_RS17080 (JUNP402_3411) | pilD | 3594794..3595654 (+) | 861 | WP_001152277.1 | A24 family peptidase | Machinery gene |
| ACAK35_RS17085 (JUNP402_3412) | coaE | 3595656..3596252 (+) | 597 | WP_000874125.1 | dephospho-CoA kinase | - |
| ACAK35_RS17090 (JUNP402_3413) | - | 3596249..3597163 (-) | 915 | WP_000075011.1 | DMT family transporter | - |
| ACAK35_RS17095 (JUNP402_3414) | rlmB | 3597199..3597948 (-) | 750 | WP_001118150.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| ACAK35_RS17100 (JUNP402_3415) | - | 3598050..3598376 (-) | 327 | WP_000099685.1 | pyrimidine/purine nucleoside phosphorylase | - |
| ACAK35_RS17105 (JUNP402_3416) | - | 3598453..3599763 (-) | 1311 | WP_000753277.1 | tetratricopeptide repeat protein | - |
Sequence
Protein
Download Length: 286 a.a. Molecular weight: 32038.43 Da Isoelectric Point: 7.1041
>NTDB_id=110097 ACAK35_RS17080 WP_001152277.1 3594794..3595654(+) (pilD) [Acinetobacter baumannii strain JUNP402]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVIVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVIVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG
Nucleotide
Download Length: 861 bp
>NTDB_id=110097 ACAK35_RS17080 WP_001152277.1 3594794..3595654(+) (pilD) [Acinetobacter baumannii strain JUNP402]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACTATGTTATGTTCATTAGTAGTCGTCATAGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACTATGTTATGTTCATTAGTAGTCGTCATAGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Acinetobacter baumannii D1279779 |
98.951 |
100 |
0.99 |
| pilD | Acinetobacter nosocomialis M2 |
98.601 |
100 |
0.986 |
| pilD | Vibrio cholerae strain A1552 |
54.044 |
95.105 |
0.514 |
| pilD | Vibrio campbellii strain DS40M4 |
52.768 |
94.755 |
0.5 |
| pilD | Neisseria gonorrhoeae MS11 |
47.727 |
92.308 |
0.441 |