Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACM1PF_RS27825 Genome accession   NZ_CP182236
Coordinates   5952324..5952689 (-) Length   121 a.a.
NCBI ID   WP_106170231.1    Uniprot ID   -
Organism   Egbenema sp. FJBBOT/2019     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5947324..5957689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM1PF_RS27815 (ACM1PF_27815) - 5948476..5951391 (-) 2916 WP_416669350.1 methyl-accepting chemotaxis protein -
  ACM1PF_RS27820 (ACM1PF_27820) - 5951562..5952092 (-) 531 WP_416669351.1 chemotaxis protein CheW -
  ACM1PF_RS27825 (ACM1PF_27825) pilH 5952324..5952689 (-) 366 WP_106170231.1 response regulator transcription factor Machinery gene
  ACM1PF_RS27830 (ACM1PF_27830) - 5953025..5954338 (-) 1314 WP_416669353.1 response regulator -
  ACM1PF_RS27835 (ACM1PF_27835) hmpF 5955419..5957158 (+) 1740 WP_416669355.1 pilus motility taxis protein HmpF -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13366.53 Da        Isoelectric Point: 5.8764

>NTDB_id=1100956 ACM1PF_RS27825 WP_106170231.1 5952324..5952689(-) (pilH) [Egbenema sp. FJBBOT/2019]
MSTVLVVEDSVTQREMITDLLKGSGLTVTVAGDGVEALEKIQGQRPDLVVLDIVMPRMNGYEVCRRLKADPKTQHVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=1100956 ACM1PF_RS27825 WP_106170231.1 5952324..5952689(-) (pilH) [Egbenema sp. FJBBOT/2019]
ATGAGTACAGTTTTGGTGGTGGAAGACAGCGTAACCCAACGGGAAATGATCACCGATTTGCTCAAAGGCAGTGGTTTAAC
CGTAACGGTTGCAGGAGATGGCGTAGAAGCGTTGGAAAAAATCCAGGGGCAGCGGCCGGATCTGGTGGTACTGGATATTG
TGATGCCTCGGATGAACGGTTACGAAGTGTGCCGACGGCTCAAAGCAGATCCCAAAACCCAGCACGTTCCGGTGGTGATG
TGTTCCTCTAAGGGGGAAGAATTCGATCGCTACTGGGGCATGAAGCAGGGAGCCGATGCCTATATTGCTAAACCCTTTCA
GCCCACAGAACTGGTTGGAACCGTCAAGCAGCTTTTGCGCGGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  pilG Acinetobacter baumannii strain A118

42.105

94.215

0.397
  vicR Streptococcus mutans UA159

39.167

99.174

0.388
  pilL-C Synechocystis sp. PCC 6803

38.017

100

0.38
  micA Streptococcus pneumoniae Cp1015

38.333

99.174

0.38
  chpA Acinetobacter baumannii strain A118

38.793

95.868

0.372

Multiple sequence alignment