Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACNHKQ_RS01930 | Genome accession | NZ_CP182139 |
| Coordinates | 406662..407198 (+) | Length | 178 a.a. |
| NCBI ID | WP_247768370.1 | Uniprot ID | - |
| Organism | Escherichia coli strain CUWW06 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 401662..412198
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACNHKQ_RS01910 (ACNHKQ_01910) | aphA | 401950..402663 (+) | 714 | Protein_354 | acid phosphatase AphA | - |
| ACNHKQ_RS01915 (ACNHKQ_01915) | yjbQ | 402774..403190 (+) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| ACNHKQ_RS01920 (ACNHKQ_01920) | yjbR | 403194..403550 (+) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| ACNHKQ_RS01925 (ACNHKQ_01925) | uvrA | 403585..406407 (-) | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | - |
| ACNHKQ_RS01930 (ACNHKQ_01930) | ssb | 406662..407198 (+) | 537 | WP_247768370.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| ACNHKQ_RS01935 (ACNHKQ_01935) | yjcB | 407297..407578 (-) | 282 | WP_001362074.1 | YjcB family protein | - |
| ACNHKQ_RS01940 (ACNHKQ_01940) | pdeC | 408007..409593 (+) | 1587 | WP_045177302.1 | c-di-GMP phosphodiesterase PdeC | - |
| ACNHKQ_RS01945 (ACNHKQ_01945) | soxS | 409596..409919 (-) | 324 | WP_000019358.1 | superoxide response transcriptional regulator SoxS | - |
| ACNHKQ_RS01950 (ACNHKQ_01950) | soxR | 410005..410469 (+) | 465 | WP_000412428.1 | redox-sensitive transcriptional activator SoxR | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19005.02 Da Isoelectric Point: 5.2358
>NTDB_id=1100535 ACNHKQ_RS01930 WP_247768370.1 406662..407198(+) (ssb) [Escherichia coli strain CUWW06]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGSQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGSQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=1100535 ACNHKQ_RS01930 WP_247768370.1 406662..407198(+) (ssb) [Escherichia coli strain CUWW06]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGCAGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGCAGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.219 |
100 |
0.601 |
| ssb | Neisseria gonorrhoeae MS11 |
47.514 |
100 |
0.483 |
| ssb | Neisseria meningitidis MC58 |
46.196 |
100 |
0.478 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.667 |
100 |
0.371 |