Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACNFWN_RS03360 Genome accession   NZ_CP181387
Coordinates   689428..690957 (-) Length   509 a.a.
NCBI ID   WP_132649325.1    Uniprot ID   A0A4R2LXA6
Organism   Rubrivivax gelatinosus isolate AJ1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 684428..695957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFWN_RS03350 - 684668..686578 (+) 1911 WP_132649323.1 glucokinase -
  ACNFWN_RS03355 metH 686700..689423 (+) 2724 WP_132649324.1 methionine synthase -
  ACNFWN_RS03360 comM 689428..690957 (-) 1530 WP_132649325.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACNFWN_RS03365 - 691358..691696 (+) 339 WP_014426485.1 P-II family nitrogen regulator -
  ACNFWN_RS03370 - 691735..693246 (+) 1512 WP_416461394.1 ammonium transporter -
  ACNFWN_RS03375 gshA 693390..694685 (+) 1296 WP_132649327.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 52473.31 Da        Isoelectric Point: 8.4148

>NTDB_id=1099927 ACNFWN_RS03360 WP_132649325.1 689428..690957(-) (comM) [Rubrivivax gelatinosus isolate AJ1]
MSLAVVASRALDGLDAPAVHVEVQLANGLPCFTLVGLADTEVKESRERVRAALQHSGFQFPHNKRITVNLAPADLPKESG
RFDLPIALGILAADGVLDAARLAANEFAGELSLAGELRPVRGALALALAARREGGGRTLVLPAASAGTAARVAGLDVRGA
ATLLEVVQALLPGEAAEPLAPARAPPAGPDEPVPDLREVRGQAAAKRALEIAAAGQHSLLFVGPPGTGKSMLAARLPGLL
PPMDDDDALVAAALQGLAPQALDGAGFGRRPVRAPHHSASAVALVGGGSPPRPGEISLAHGGVLFLDELPEFARAALEAL
REPLETGRVTISRAARQAQFPARFQLVAAMNPCPCGWLGAFAATGRACRCGADQVARYRSRLSGPLLDRIDLQIEVPAVR
PAELLAAPDGESSALVAARVAAARRRQIERQGEPNGVLGAARTDTCCIADAAARRLLQTAAEKLGWSGRRLHRTLRVART
IADLGAAPTIGVTAMAEALQLQRGLDAAG

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=1099927 ACNFWN_RS03360 WP_132649325.1 689428..690957(-) (comM) [Rubrivivax gelatinosus isolate AJ1]
ATGAGCTTGGCGGTGGTGGCGAGCCGAGCGCTCGACGGGCTGGACGCGCCGGCGGTGCACGTCGAGGTGCAGCTCGCCAA
CGGGCTGCCTTGTTTCACGCTCGTCGGCCTCGCGGATACCGAAGTCAAGGAGTCGCGCGAGCGCGTGCGCGCGGCCTTGC
AGCACAGCGGCTTCCAGTTCCCGCACAACAAGCGCATCACGGTCAACCTGGCGCCGGCCGACCTGCCCAAGGAGTCGGGC
CGCTTCGACCTGCCGATCGCACTCGGCATCCTGGCCGCCGACGGCGTGCTCGACGCCGCACGGCTGGCGGCCAACGAGTT
CGCCGGTGAACTCTCGCTGGCCGGCGAACTGCGCCCGGTGCGCGGCGCGCTGGCGCTGGCGCTGGCCGCGCGGCGCGAAG
GCGGTGGGCGCACGCTGGTGCTGCCGGCGGCCAGCGCCGGCACGGCCGCGCGTGTGGCCGGGCTGGACGTGCGCGGCGCG
GCGACGCTGCTCGAGGTCGTGCAGGCGCTGCTGCCCGGCGAGGCCGCCGAGCCGCTGGCACCCGCGCGGGCGCCGCCGGC
CGGCCCCGACGAGCCGGTGCCCGACCTGCGCGAGGTGCGCGGCCAGGCCGCCGCCAAGCGGGCGCTGGAGATCGCCGCGG
CGGGGCAGCATTCGCTGCTCTTCGTCGGCCCTCCCGGCACCGGCAAGTCGATGCTCGCGGCGCGCCTGCCGGGGCTGCTG
CCGCCGATGGACGACGACGACGCGCTCGTGGCCGCCGCGCTGCAAGGCCTGGCGCCGCAGGCGCTGGACGGCGCCGGTTT
CGGCCGCCGCCCGGTGCGCGCGCCGCACCACAGCGCCAGCGCGGTGGCTCTGGTCGGCGGCGGCTCGCCACCACGGCCGG
GCGAGATCTCGCTGGCGCACGGAGGCGTGCTGTTCCTGGACGAACTGCCCGAGTTCGCCCGCGCCGCGCTGGAGGCGCTG
CGTGAACCGCTGGAGACCGGCCGGGTGACGATCTCGCGTGCCGCGCGCCAGGCGCAGTTCCCGGCGCGGTTCCAGCTCGT
CGCGGCGATGAACCCCTGCCCCTGCGGCTGGCTCGGCGCCTTCGCCGCCACCGGCCGCGCCTGCCGCTGCGGTGCCGACC
AGGTGGCGCGTTACCGCAGCCGGCTGTCGGGGCCGCTGCTGGACCGCATCGACCTGCAGATCGAGGTGCCGGCGGTGCGC
CCGGCGGAGCTGCTGGCCGCGCCCGACGGCGAAAGTTCCGCGCTCGTCGCCGCGCGTGTCGCCGCGGCGCGGAGGCGCCA
GATCGAACGCCAGGGCGAGCCCAACGGCGTGCTCGGCGCCGCACGCACCGACACCTGCTGCATTGCCGATGCCGCCGCGC
GGCGCCTGCTGCAGACGGCGGCCGAGAAGCTCGGCTGGTCGGGCCGGCGATTGCACCGCACGCTGCGCGTCGCGCGCACG
ATCGCCGACCTGGGCGCCGCCCCGACGATCGGTGTCACCGCGATGGCCGAGGCGCTGCAGCTGCAGCGCGGGCTCGACGC
CGCGGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(410-501)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-403)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R2LXA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.491

98.821

0.509
  comM Vibrio cholerae strain A1552

51.2

98.232

0.503
  comM Vibrio campbellii strain DS40M4

50.598

98.625

0.499
  comM Glaesserella parasuis strain SC1401

49.105

98.821

0.485
  comM Legionella pneumophila str. Paris

45.079

99.804

0.45
  comM Legionella pneumophila strain ERS1305867

45.079

99.804

0.45
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.249

100

0.434

Multiple sequence alignment