Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H9T68_RS01285 Genome accession   NZ_CP181346
Coordinates   279845..281446 (-) Length   533 a.a.
NCBI ID   WP_280188933.1    Uniprot ID   -
Organism   Delftia sp. PS-11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 274845..286446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9T68_RS01270 (H9T68_001270) - 276555..277628 (-) 1074 WP_280188926.1 NAD(P)H-dependent flavin oxidoreductase -
  H9T68_RS01275 (H9T68_001275) - 277625..278827 (-) 1203 WP_280188928.1 YbfB/YjiJ family MFS transporter -
  H9T68_RS01280 (H9T68_001280) - 278933..279850 (+) 918 WP_280188931.1 LysR substrate-binding domain-containing protein -
  H9T68_RS01285 (H9T68_001285) comM 279845..281446 (-) 1602 WP_280188933.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H9T68_RS01290 (H9T68_001290) - 281867..283600 (+) 1734 WP_280188936.1 tannase/feruloyl esterase family alpha/beta hydrolase -
  H9T68_RS01295 (H9T68_001295) betA 283609..285294 (-) 1686 WP_280188938.1 choline dehydrogenase -

Sequence

Protein


Download         Length: 533 a.a.        Molecular weight: 56550.33 Da        Isoelectric Point: 7.4344

>NTDB_id=1099802 H9T68_RS01285 WP_280188933.1 279845..281446(-) (comM) [Delftia sp. PS-11]
MGLALVQSRALLGLDAPRVTVEVHLANGLPSFTLVGLADVEVKEARERVRSALLNSGLEFPGNKRIIVNLAPADLPKDSG
RFDLPIALGILAASGQIDGSALADYEFAGELSLSGALRPVRGALATALARHRQQDGARLVLPPGSAQEAAFVPSAQVFCA
HHLLDVVRRFIARAAQAETTLDETLQDSGHTDEPQAGEERLCPGPGWHAVQPQPAAATHSGPDLAEVRGQAQARRALEIA
AAGGHGLLLVGPPGSGKSMLAQRFAGLLPPMNDDEALEAAAIASLAGRFTPQHWRQRPTASPHHTASAVALVGGGSPPRP
GEISQSHHGVLFLDEFPEFARSALEALREPLETGQITIARAARRCEFPARFQLIAAMNPCPCGHWGSTVQRCRCTPDKVA
RYQARISGPLLDRIDLHVEVSALPPEELLAARSGEGSDAVRERVIQARALAVQRQGCANHQLQGQALDDHLGLSPEALLF
AHKAAARLGWSARGTHRALRVARTIADLAGSTAVETGHVAEAMQYRRVLRMPS

Nucleotide


Download         Length: 1602 bp        

>NTDB_id=1099802 H9T68_RS01285 WP_280188933.1 279845..281446(-) (comM) [Delftia sp. PS-11]
ATGGGTCTGGCCCTGGTTCAAAGTCGCGCGCTGCTGGGGCTGGATGCGCCACGGGTCACCGTGGAAGTGCATCTGGCCAA
CGGCCTGCCATCGTTCACCCTGGTCGGTCTGGCCGATGTCGAGGTCAAGGAGGCGCGCGAGCGCGTGCGCTCGGCGCTGC
TCAATTCGGGGCTGGAGTTTCCCGGCAACAAGCGCATCATCGTCAACCTGGCGCCCGCCGATCTGCCCAAGGATTCGGGA
CGGTTCGACCTGCCCATCGCGCTGGGGATTCTGGCGGCCAGCGGGCAGATCGATGGCAGCGCCCTGGCGGACTACGAGTT
CGCGGGAGAGCTGTCGCTGTCAGGCGCGCTGCGGCCCGTGCGCGGCGCGCTGGCCACGGCACTGGCACGGCACCGCCAGC
AGGATGGCGCGCGCCTGGTGCTGCCGCCGGGCAGCGCGCAGGAAGCAGCCTTCGTGCCCTCGGCCCAGGTGTTCTGCGCG
CACCACCTGCTCGATGTGGTGCGCCGCTTCATCGCACGCGCCGCGCAGGCAGAGACAACGCTGGACGAGACACTGCAGGA
CAGCGGCCATACCGATGAGCCCCAGGCTGGCGAGGAGCGGCTGTGTCCGGGGCCGGGCTGGCACGCGGTGCAGCCGCAGC
CGGCAGCCGCCACGCACAGCGGACCGGACCTGGCCGAAGTGCGCGGCCAGGCCCAGGCCCGGCGTGCGCTGGAGATTGCG
GCAGCCGGAGGCCATGGCCTGCTGCTGGTGGGGCCGCCGGGATCGGGCAAGTCCATGCTGGCCCAGCGCTTTGCCGGCCT
GCTGCCGCCCATGAACGATGACGAGGCCCTGGAGGCCGCCGCCATCGCCAGCCTGGCCGGCCGTTTCACGCCGCAGCACT
GGCGCCAGCGCCCCACGGCCAGCCCGCACCACACGGCCAGCGCCGTGGCGCTGGTGGGTGGCGGCTCGCCGCCACGGCCC
GGCGAGATATCCCAGTCGCACCACGGCGTGCTGTTTCTCGACGAATTCCCCGAGTTCGCGCGCAGTGCGCTGGAGGCGCT
GCGCGAGCCGCTGGAGACCGGCCAGATCACGATTGCGCGCGCTGCCCGGCGCTGCGAGTTTCCCGCGCGCTTTCAGCTGA
TCGCGGCCATGAATCCCTGTCCCTGCGGCCACTGGGGATCGACGGTGCAGCGCTGCCGCTGCACGCCCGACAAGGTGGCG
CGCTACCAGGCGCGCATCAGCGGCCCGCTGCTGGACCGCATCGACCTGCATGTGGAAGTCAGCGCCCTGCCGCCGGAAGA
ACTGCTGGCCGCGCGCAGCGGCGAAGGCAGCGATGCCGTGCGCGAACGCGTGATCCAGGCACGCGCCCTGGCCGTGCAGC
GCCAGGGCTGCGCCAACCACCAGCTCCAGGGGCAGGCCCTGGACGATCACCTGGGCCTGTCGCCCGAGGCCCTGCTCTTC
GCCCACAAGGCCGCAGCACGCCTGGGCTGGTCGGCGCGCGGCACCCACCGCGCGCTCAGGGTGGCGCGCACCATCGCGGA
CCTGGCAGGCAGCACGGCCGTGGAGACAGGACATGTGGCCGAAGCCATGCAGTACCGGCGCGTGCTGCGGATGCCGTCAT
GA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(223-427)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(434-526)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

47.94

100

0.48
  comM Vibrio campbellii strain DS40M4

47.842

100

0.478
  comM Haemophilus influenzae Rd KW20

47.201

100

0.475
  comM Glaesserella parasuis strain SC1401

47.004

100

0.471
  comM Legionella pneumophila str. Paris

46.642

100

0.469
  comM Legionella pneumophila strain ERS1305867

46.642

100

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.386

100

0.415

Multiple sequence alignment