Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACM67B_RS02480 Genome accession   NZ_CP181247
Coordinates   510610..512712 (-) Length   700 a.a.
NCBI ID   WP_416190011.1    Uniprot ID   -
Organism   Neisseria sp. CCUG17229     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 505610..517712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67B_RS02455 (ACM67B_02455) - 506449..507039 (-) 591 WP_416190007.1 cytochrome C -
  ACM67B_RS02460 (ACM67B_02460) nrdR 507086..507550 (-) 465 WP_095502373.1 transcriptional regulator NrdR -
  ACM67B_RS02465 (ACM67B_02465) - 507674..508516 (-) 843 WP_416190008.1 class II glutamine amidotransferase -
  ACM67B_RS02470 (ACM67B_02470) aroB 508691..509770 (-) 1080 WP_416190009.1 3-dehydroquinate synthase -
  ACM67B_RS02475 (ACM67B_02475) - 509972..510487 (-) 516 WP_416190010.1 shikimate kinase -
  ACM67B_RS02480 (ACM67B_02480) pilQ 510610..512712 (-) 2103 WP_416190011.1 type IV pilus secretin PilQ Machinery gene
  ACM67B_RS02485 (ACM67B_02485) - 512729..513322 (-) 594 WP_416190012.1 pilus assembly protein PilP -
  ACM67B_RS02490 (ACM67B_02490) - 513344..514018 (-) 675 WP_416190013.1 type 4a pilus biogenesis protein PilO -
  ACM67B_RS02495 (ACM67B_02495) pilN 514019..514630 (-) 612 WP_416190014.1 PilN domain-containing protein Machinery gene
  ACM67B_RS02500 (ACM67B_02500) pilM 514632..515726 (-) 1095 WP_416190015.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 76549.73 Da        Isoelectric Point: 8.8785

>NTDB_id=1099566 ACM67B_RS02480 WP_416190011.1 510610..512712(-) (pilQ) [Neisseria sp. CCUG17229]
MRINCMTKPFAALNMVLAVQTAFAGNITDINVSALPDNQKIIKIRFDRDITSPTGFVTSTPARIALDFANTNIQLSQPVL
EYSDPLLSQITAAQNKDYARILLGLNKTGQYNTEIRGDEVWVYVREAADQNVAAPAASYSAPAPAPTPAAARATQASQVA
TSANVDFRKGSRNSGVVELSAPTFSGSPDVKQERDRVVITLKNHPLPTQAQRNLDVGDFNTPVQNVTLKRIGNATQLIIR
TKGNWDINTQSAAGRHTFEIVPKAATTESRSLRNHANKSFRGHKISLDFQDVEVRTILQILSKESDVNIVASDTVNGKMT
LSLKDVPWDQALDLVMQARNLDMRRQGNIINIAPRDELLAKDKVFLQAEKELAELGPLLSQTFQLKYKNVEEFRKILRLE
ENNSHNSRTKSNTLLSTRGSALIDSATNTLIISDNHSVIEKFRRLIAELDVPTRQVMIEARIVEADESLSHDLGVKFGYH
GVRGRNTWGSNLGNTHSVLALNPNINLPITHTPTTSIALVRSLSSGALGLELAAAESQNKSKTISNPRILTQDRQEASIE
SGTEIPYQEATSSGATSVSFKKAVLGLTVTPNITPDGQIIMAVNINKDTPSPCTVDSLNTMCISTKSLNTQAMVEDGGTL
IVGGIYEEENSNTVNKVPLLGDIPVVGNLFKSRSRNEARRELLVFITPRIMDSVGNNLRY

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=1099566 ACM67B_RS02480 WP_416190011.1 510610..512712(-) (pilQ) [Neisseria sp. CCUG17229]
ATGAGAATCAACTGTATGACAAAGCCCTTTGCCGCCCTCAACATGGTACTGGCTGTTCAGACGGCCTTTGCCGGCAACAT
TACCGATATCAATGTATCCGCTTTGCCAGATAATCAAAAAATCATCAAAATCCGTTTTGATCGCGACATTACCAGCCCTA
CCGGCTTTGTGACTTCTACACCTGCACGCATCGCCTTAGATTTTGCCAATACCAATATTCAATTATCCCAACCGGTATTG
GAATATTCAGACCCTTTATTGAGCCAAATTACCGCGGCTCAGAATAAAGATTACGCCCGCATTTTGTTAGGCCTGAACAA
AACCGGTCAATACAACACCGAAATCCGTGGTGACGAAGTATGGGTTTATGTCAGAGAAGCCGCTGATCAAAATGTAGCTG
CACCCGCAGCCTCCTATTCGGCTCCCGCACCAGCCCCTACTCCTGCCGCAGCACGTGCTACTCAAGCCAGCCAAGTCGCC
ACCAGTGCCAATGTTGATTTCCGCAAAGGTTCGCGTAACTCTGGTGTTGTCGAATTATCAGCGCCTACCTTCTCAGGCAG
CCCTGATGTGAAGCAAGAGCGTGACCGTGTGGTAATTACCTTAAAAAATCATCCTCTGCCCACTCAAGCACAACGCAATT
TAGATGTAGGCGACTTCAATACACCGGTGCAAAACGTGACATTAAAACGCATTGGTAATGCAACACAATTGATTATCCGC
ACCAAAGGCAACTGGGACATCAACACCCAATCTGCTGCCGGTCGTCATACTTTTGAAATTGTGCCAAAAGCTGCCACGAC
TGAAAGCCGTAGCTTACGCAACCATGCCAACAAATCCTTCCGCGGCCACAAAATTTCTTTAGATTTCCAAGATGTAGAAG
TCCGTACTATTTTGCAAATTTTGTCTAAAGAATCAGATGTGAATATCGTGGCCAGCGATACGGTTAACGGTAAAATGACT
TTATCATTAAAAGATGTGCCTTGGGATCAGGCATTGGATTTGGTGATGCAGGCACGTAATTTAGATATGCGTCGCCAAGG
CAATATCATCAATATCGCTCCGCGCGATGAATTGTTGGCTAAAGACAAAGTGTTCTTGCAAGCGGAAAAAGAGCTTGCTG
AATTAGGCCCATTGTTGTCACAAACCTTCCAACTGAAATACAAAAATGTTGAAGAATTCCGCAAAATTCTGCGTTTAGAA
GAAAACAATAGTCATAACAGCCGTACCAAAAGCAATACTTTGCTGAGTACCCGTGGCAGCGCATTAATTGATTCTGCCAC
CAATACCTTAATCATCAGTGACAACCACAGCGTCATTGAGAAGTTCCGCCGATTAATCGCCGAACTCGATGTTCCTACAC
GCCAAGTTATGATCGAAGCTCGGATTGTAGAGGCCGATGAAAGCCTTTCTCATGATTTGGGCGTCAAATTTGGTTATCAT
GGTGTCAGAGGACGCAATACTTGGGGCTCAAATTTAGGGAATACTCATTCTGTTTTGGCGTTGAATCCCAATATCAACCT
ACCGATCACCCATACCCCAACTACATCCATTGCTCTAGTTCGCTCACTTTCTTCTGGTGCGCTAGGCTTGGAATTAGCCG
CAGCAGAAAGCCAGAATAAAAGCAAAACCATTTCCAACCCCCGCATCCTGACGCAAGACCGTCAAGAAGCCTCTATTGAA
TCGGGTACGGAAATTCCTTATCAAGAAGCCACTTCGAGCGGTGCGACCTCTGTATCCTTCAAAAAAGCCGTATTAGGTCT
GACGGTCACACCGAATATTACGCCCGATGGTCAAATTATTATGGCAGTCAACATCAATAAAGATACCCCTTCACCCTGTA
CGGTAGATTCATTAAATACCATGTGTATCAGCACCAAAAGCCTGAACACACAAGCCATGGTAGAAGATGGCGGCACCTTG
ATTGTGGGCGGTATTTACGAGGAAGAAAATTCCAATACGGTCAACAAAGTACCTTTATTGGGTGACATTCCGGTAGTGGG
CAACTTGTTCAAATCACGTAGCCGCAATGAAGCGCGCCGTGAATTGCTGGTTTTCATCACGCCGCGCATTATGGATAGCG
TAGGCAACAACTTGCGCTACTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(381-455)

AMIN domain (AMIN)

(38-115)

Bacterial type II and III secretion system protein (Secretin)

(534-692)

Secretin and TonB N terminus short domain (STN)

(307-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis MC58

57.916

100

0.627
  pilQ Neisseria meningitidis M1080

58.533

100

0.627
  pilQ Neisseria gonorrhoeae strain FA1090

60.759

100

0.617
  pilQ Pseudomonas aeruginosa PAK

35.327

100

0.363

Multiple sequence alignment