Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACM67B_RS02495 Genome accession   NZ_CP181247
Coordinates   514019..514630 (-) Length   203 a.a.
NCBI ID   WP_416190014.1    Uniprot ID   -
Organism   Neisseria sp. CCUG17229     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 509019..519630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67B_RS02475 (ACM67B_02475) - 509972..510487 (-) 516 WP_416190010.1 shikimate kinase -
  ACM67B_RS02480 (ACM67B_02480) pilQ 510610..512712 (-) 2103 WP_416190011.1 type IV pilus secretin PilQ Machinery gene
  ACM67B_RS02485 (ACM67B_02485) - 512729..513322 (-) 594 WP_416190012.1 pilus assembly protein PilP -
  ACM67B_RS02490 (ACM67B_02490) - 513344..514018 (-) 675 WP_416190013.1 type 4a pilus biogenesis protein PilO -
  ACM67B_RS02495 (ACM67B_02495) pilN 514019..514630 (-) 612 WP_416190014.1 PilN domain-containing protein Machinery gene
  ACM67B_RS02500 (ACM67B_02500) pilM 514632..515726 (-) 1095 WP_416190015.1 type IV pilus assembly protein PilM -
  ACM67B_RS02505 (ACM67B_02505) - 515879..518272 (+) 2394 WP_416190016.1 penicillin-binding protein 1A -
  ACM67B_RS02510 (ACM67B_02510) yihA 518378..519010 (-) 633 WP_095502383.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22857.53 Da        Isoelectric Point: 8.2795

>NTDB_id=1099567 ACM67B_RS02495 WP_416190014.1 514019..514630(-) (pilN) [Neisseria sp. CCUG17229]
MIELIKINLLPYREEIRQRKKQQFKILMLTALLIGLGLSALTYLSINGAIDSQQGRNAFLESEIKKLDDDLGEIKKLQAE
KENFLAKKIKVEELQEKRSQAAYIIDMLNVLTPDNTYLTALEAENPTTYKVTGRAISDNKIAVFMRALPSTGVFTQPELL
SIKKVENYQEFTLRVLLTQNTAPVANLTASEATLQTTPVQEAK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1099567 ACM67B_RS02495 WP_416190014.1 514019..514630(-) (pilN) [Neisseria sp. CCUG17229]
ATGATTGAACTTATTAAAATCAACCTTCTTCCTTATCGGGAAGAGATTAGACAACGTAAAAAGCAACAGTTCAAAATATT
AATGCTGACTGCCTTGCTGATTGGCCTGGGCTTATCAGCATTGACCTATTTGAGCATTAATGGTGCCATCGACAGCCAAC
AGGGCCGCAATGCATTCCTTGAGTCGGAAATCAAAAAACTGGATGACGATTTGGGCGAAATCAAAAAGCTGCAAGCAGAA
AAAGAAAATTTCTTAGCCAAGAAAATCAAGGTTGAAGAATTGCAAGAAAAACGCTCTCAAGCAGCATATATTATTGATAT
GCTGAATGTTTTGACACCTGACAATACCTACCTGACTGCTTTGGAAGCTGAAAATCCGACTACTTATAAGGTAACCGGCC
GTGCCATCAGCGACAACAAAATCGCCGTATTTATGCGCGCATTGCCAAGCACAGGTGTATTCACCCAACCTGAACTGTTA
AGCATTAAAAAAGTAGAAAACTATCAAGAATTTACTCTGCGTGTCTTACTGACTCAAAATACCGCTCCTGTAGCCAACCT
TACCGCTTCGGAAGCTACGCTTCAGACGACACCTGTACAGGAGGCAAAATAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(105-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

51.485

99.507

0.512

Multiple sequence alignment