Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACGHAD_RS01125 Genome accession   NZ_AP031500
Coordinates   266829..268337 (-) Length   502 a.a.
NCBI ID   WP_382414124.1    Uniprot ID   -
Organism   Gilvimarinus japonicus strain 12-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 261829..273337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHAD_RS01110 (R50076_02260) - 262287..262718 (+) 432 WP_382414121.1 c-type cytochrome -
  ACGHAD_RS01115 (R50076_02270) rep 262814..264823 (-) 2010 WP_339616968.1 DNA helicase Rep -
  ACGHAD_RS01120 (R50076_02280) - 265105..266832 (+) 1728 WP_339616969.1 EAL domain-containing protein -
  ACGHAD_RS01125 (R50076_02290) comM 266829..268337 (-) 1509 WP_382414124.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACGHAD_RS01130 (R50076_02300) - 268390..268635 (-) 246 WP_382414126.1 accessory factor UbiK family protein -
  ACGHAD_RS01135 (R50076_02310) - 269090..269428 (+) 339 WP_339616972.1 P-II family nitrogen regulator -
  ACGHAD_RS01140 (R50076_02320) - 269480..270748 (+) 1269 WP_382414128.1 ammonium transporter -
  ACGHAD_RS01145 (R50076_02330) - 270965..271303 (+) 339 WP_339616974.1 P-II family nitrogen regulator -
  ACGHAD_RS01150 (R50076_02340) - 271439..271762 (-) 324 WP_382414130.1 hypothetical protein -
  ACGHAD_RS01155 (R50076_02350) - 272158..272436 (+) 279 WP_339616976.1 hypothetical protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54344.13 Da        Isoelectric Point: 7.9326

>NTDB_id=109943 ACGHAD_RS01125 WP_382414124.1 266829..268337(-) (comM) [Gilvimarinus japonicus strain 12-2]
MSLAIVHTRAQLGVEAPPVTVEVHLSNGLPSLAIVGMPETAVKESKDRVRSAILNSHLEFPARRITVNLAPADLPKEGGR
YDLAIAIGILAASEQVPSELLNELELIGELALSGAVRPVTGTLPAALAAGRDGHRLIVASENAPEAAMARNTTIYSAENL
LRVCAHLHRRSELPNSDFPATPARRPQPELADVKGQQQAKRALEVAASGGHNLLMFGPPGTGKTMLASRLPGILPAIDER
DALEVAAVYSVCGVEHSPLWLERPFRAPHHTASAAALVGGGTQPRPGEISLAHGGVLFLDELPEFQRQVLEVLREPMESG
EIRISRARAQTCYPARFQLIAAMNPCPCGYFGGRSAGNDSRCRCTSEQIQRYRNKISGPMLDRIDLHVPVHNIPPSELNN
APAGEPSATVQARVSRTVKQQQQRQQKLNAHMSSKDIEQFCPLAQEDQQFLEAAVIRLGLSTRSYYRVLKVARTLADMAQ
QDTISRPQLAEALSFRALDRAP

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=109943 ACGHAD_RS01125 WP_382414124.1 266829..268337(-) (comM) [Gilvimarinus japonicus strain 12-2]
ATGTCACTCGCCATTGTTCACACCCGCGCCCAGCTCGGCGTCGAGGCCCCGCCGGTCACCGTTGAGGTGCACCTGTCCAA
TGGCTTGCCCTCTCTTGCGATTGTCGGCATGCCAGAAACGGCGGTTAAAGAAAGCAAAGACCGAGTGCGCAGCGCAATTT
TAAACTCCCATCTTGAGTTTCCAGCGCGCCGCATTACCGTCAACCTAGCGCCCGCCGATTTGCCCAAAGAGGGCGGCCGT
TACGACTTGGCCATCGCTATTGGCATTCTCGCCGCCTCCGAGCAAGTACCCAGCGAGCTTCTAAACGAGCTTGAACTAAT
AGGTGAGCTGGCGCTATCGGGCGCCGTGCGACCGGTAACCGGCACCCTGCCTGCGGCGTTAGCGGCCGGGCGCGACGGGC
ACCGCTTAATCGTCGCCAGCGAGAACGCCCCCGAAGCGGCCATGGCACGCAACACCACCATTTACAGCGCCGAGAATCTA
TTGCGGGTTTGTGCTCACCTGCACCGGCGCAGTGAGTTGCCCAACAGTGACTTTCCCGCCACCCCAGCGCGTCGCCCGCA
ACCAGAGCTAGCGGACGTCAAAGGACAACAGCAGGCAAAACGAGCGCTAGAGGTTGCCGCCAGCGGCGGCCATAATTTAT
TAATGTTTGGCCCGCCCGGCACCGGCAAGACCATGCTCGCCAGCCGCCTACCCGGTATCTTGCCCGCGATTGATGAGCGC
GACGCGCTGGAGGTGGCCGCGGTTTACTCGGTCTGTGGCGTCGAACATAGCCCGCTCTGGCTCGAGCGGCCATTTCGCGC
GCCGCACCACACGGCCTCGGCGGCGGCTTTAGTCGGTGGCGGCACCCAACCGCGTCCCGGTGAGATCTCGCTGGCCCACG
GCGGCGTATTATTTTTAGATGAACTGCCCGAGTTTCAGCGACAAGTGCTAGAAGTGCTGCGCGAGCCCATGGAAAGCGGC
GAAATTCGTATCTCCCGCGCCCGCGCGCAAACCTGCTACCCGGCGCGCTTTCAGTTGATCGCCGCCATGAACCCATGCCC
GTGCGGTTACTTTGGCGGCCGCAGCGCCGGCAACGACTCGCGCTGTCGCTGCACTAGCGAACAAATACAGCGCTATCGCA
ATAAGATCTCAGGGCCCATGCTTGACCGTATCGATCTGCACGTACCAGTGCACAATATTCCCCCCAGCGAGCTCAACAAC
GCACCCGCAGGCGAACCCAGCGCCACGGTCCAAGCGCGGGTCAGCCGTACGGTTAAACAACAGCAACAGCGGCAACAGAA
GCTCAACGCGCACATGAGCTCTAAAGATATCGAGCAATTTTGCCCATTGGCACAGGAGGATCAGCAATTTCTGGAGGCAG
CGGTGATACGGCTGGGACTTTCGACTCGCTCGTATTACCGGGTCTTAAAAGTGGCCCGTACACTGGCCGATATGGCGCAG
CAAGACACCATTAGCCGACCTCAGCTGGCCGAGGCGCTTAGCTTTAGGGCACTGGACCGGGCGCCCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.248

100

0.556
  comM Vibrio campbellii strain DS40M4

54.15

100

0.546
  comM Haemophilus influenzae Rd KW20

52.849

100

0.536
  comM Glaesserella parasuis strain SC1401

53.057

100

0.536
  comM Legionella pneumophila str. Paris

52.191

100

0.522
  comM Legionella pneumophila strain ERS1305867

52.191

100

0.522
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.52

100

0.448

Multiple sequence alignment