Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACGHZ6_RS01855 Genome accession   NZ_AP031498
Coordinates   405282..407426 (+) Length   714 a.a.
NCBI ID   WP_390617083.1    Uniprot ID   -
Organism   Maricurvus nonylphenolicus strain KU41E     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 400282..412426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHZ6_RS01835 (R50073_03670) pilM 402495..403562 (+) 1068 WP_390617079.1 pilus assembly protein PilM Machinery gene
  ACGHZ6_RS01840 (R50073_03680) - 403562..404128 (+) 567 WP_390617080.1 PilN domain-containing protein -
  ACGHZ6_RS01845 (R50073_03690) - 404129..404740 (+) 612 WP_390617081.1 type 4a pilus biogenesis protein PilO -
  ACGHZ6_RS01850 (R50073_03700) - 404743..405276 (+) 534 WP_390617082.1 pilus assembly protein PilP -
  ACGHZ6_RS01855 (R50073_03710) pilQ 405282..407426 (+) 2145 WP_390617083.1 type IV pilus secretin PilQ Machinery gene
  ACGHZ6_RS01860 (R50073_03720) aroK 407444..407959 (+) 516 WP_390617084.1 shikimate kinase AroK -
  ACGHZ6_RS01865 (R50073_03730) aroB 408067..409143 (+) 1077 WP_390619138.1 3-dehydroquinate synthase -
  ACGHZ6_RS01870 (R50073_03740) - 409175..410812 (+) 1638 WP_390617085.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 78237.53 Da        Isoelectric Point: 4.2899

>NTDB_id=109919 ACGHZ6_RS01855 WP_390617083.1 405282..407426(+) (pilQ) [Maricurvus nonylphenolicus strain KU41E]
MLKMQLKWASIVARWGVLCLFALLGVSVVQANTLQDVKFAELPGERFEVRMDFSSVPSEPTGYTIEQPARIVLDFPSVEN
ALTQRKFPLSFGNAKSAVVLSSNDRTRLILNLQELTVYTSRVDGNAYLIEVGAKQADGYLTETASIADKVESTVSDLSTS
IANIDFRRGEQGEGKIIVELSDPGVDIDVKKVSSGVVVNFNGVQLPQQLRRNLDVIDFATPVSMVKADYDGADSTLEISA
AGDYDYLAYQADNEYVISVKPLTLQELEEKKARFSFVGEKLSLNFQNIEVRSVLQLIADFTELNLVASDTVTGSITLRLE
NVPWDQALDLVLKAKGLDKRQVGNVLMVAPAAEIAERERQELETQKQLQELAPLRTEFIRLRYASAENFLALFKDSKGEG
EDSEGILSERGTAIVDPRTNSIVLTETEQKITEFKELIKNIDVPIRQVMIESRIVIANTDFRKELGVRWAGDYATTTSGG
NHKWEGSGRLEGIVNNDGQGPEGLFIDSDGDGITDDERSLVDSSLVDLGVAGPTGSLALNFVSDNILLGLELSALQTNGY
AEIVSQPKVITGDKQIAHIESGTEIPYLEASSSGATSVSFKEAVLKLEVTPQITPDDQIIMKLKVNQDSVGEVFSDIPSI
DVTELQTQVLVGNGQTVVLGGIFQTQTVTSEEKVPFLGDLPYLGRLFRKDINSEDKRELLIFITPKILADQLAN

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=109919 ACGHZ6_RS01855 WP_390617083.1 405282..407426(+) (pilQ) [Maricurvus nonylphenolicus strain KU41E]
ATGTTGAAAATGCAACTTAAGTGGGCTTCGATTGTGGCTCGATGGGGGGTGCTCTGCCTATTTGCTCTCTTGGGGGTATC
GGTGGTTCAAGCGAATACGCTCCAAGATGTAAAGTTCGCTGAACTTCCGGGGGAGCGGTTTGAGGTTCGTATGGATTTCT
CTAGCGTTCCATCCGAGCCAACCGGTTATACTATTGAGCAGCCTGCTCGAATTGTGTTGGATTTTCCTAGTGTCGAGAAT
GCGCTAACGCAGCGTAAGTTCCCTTTGTCGTTTGGTAATGCTAAGAGTGCGGTGGTCCTAAGTAGTAATGACAGGACTCG
CCTGATCCTTAATCTACAAGAATTGACGGTATACACTTCGCGAGTAGATGGTAACGCCTATTTGATTGAGGTTGGTGCAA
AGCAGGCTGATGGCTACCTGACGGAGACTGCCAGTATTGCGGATAAGGTTGAATCAACGGTAAGTGATTTAAGTACATCT
ATTGCTAATATCGATTTTAGGCGCGGCGAGCAAGGTGAAGGGAAGATCATAGTTGAATTGTCAGACCCTGGCGTTGATAT
CGATGTGAAAAAGGTTTCTAGTGGTGTGGTTGTAAACTTCAATGGGGTGCAGCTACCACAACAATTGCGTCGAAACCTTG
ATGTTATCGACTTCGCGACGCCTGTGAGTATGGTTAAGGCTGATTATGATGGGGCTGATTCTACGTTAGAGATTAGCGCT
GCAGGTGACTATGATTATCTGGCTTATCAAGCAGATAATGAGTATGTGATAAGCGTTAAACCTCTAACCCTTCAGGAGCT
AGAGGAGAAAAAGGCAAGATTCTCATTTGTTGGTGAGAAGCTGTCCCTAAATTTTCAAAATATAGAAGTGCGCTCCGTCC
TTCAGTTGATTGCCGACTTTACGGAATTAAACTTGGTGGCAAGTGATACGGTAACAGGCAGTATTACTTTACGACTGGAG
AATGTGCCTTGGGATCAAGCTCTAGATCTGGTATTGAAAGCAAAAGGCTTGGATAAGCGGCAAGTTGGAAATGTATTGAT
GGTAGCCCCTGCGGCAGAGATCGCTGAACGTGAGAGGCAGGAGCTGGAAACGCAGAAACAATTGCAAGAATTGGCGCCTC
TGCGTACTGAGTTTATACGTCTACGATATGCTAGTGCAGAAAACTTCTTGGCTCTATTCAAGGATAGTAAGGGGGAGGGC
GAAGATTCGGAAGGTATTTTGTCTGAGCGAGGAACAGCTATTGTTGACCCCCGTACTAACTCTATTGTTCTGACAGAGAC
AGAGCAGAAAATTACTGAATTTAAAGAGCTGATAAAGAATATTGATGTTCCAATTCGTCAAGTCATGATCGAGTCTAGGA
TAGTTATAGCAAATACTGATTTCAGGAAAGAGCTAGGTGTACGTTGGGCAGGTGATTACGCTACGACTACTAGCGGCGGA
AACCACAAGTGGGAGGGGTCCGGAAGGCTTGAAGGGATCGTAAATAATGATGGGCAGGGTCCGGAAGGCTTATTCATAGA
TTCTGATGGAGATGGAATTACTGACGATGAACGCAGCCTTGTTGATTCTTCTCTAGTGGACCTTGGTGTGGCAGGCCCGA
CGGGATCTTTGGCTCTAAATTTTGTTAGCGATAATATTTTGTTGGGTCTAGAGTTGAGTGCTCTGCAAACTAATGGGTAT
GCTGAGATAGTGTCTCAACCAAAGGTAATCACTGGCGATAAACAGATAGCTCATATTGAGTCAGGCACTGAGATTCCCTA
CTTGGAGGCCTCTTCAAGTGGTGCCACGTCGGTTTCATTTAAAGAGGCTGTATTAAAGTTGGAAGTGACGCCTCAGATTA
CACCTGATGATCAAATTATTATGAAGCTGAAGGTGAATCAGGATTCTGTTGGTGAGGTTTTCTCTGATATCCCAAGCATT
GATGTGACTGAGTTGCAAACTCAGGTTTTGGTTGGGAATGGTCAGACGGTTGTACTGGGGGGGATCTTTCAGACTCAAAC
GGTGACTTCAGAAGAGAAAGTTCCTTTTTTGGGTGATCTGCCTTACTTGGGACGTTTATTTAGAAAAGATATTAACAGTG
AAGATAAGCGTGAGCTGTTAATCTTCATCACGCCAAAAATTCTGGCTGACCAGTTAGCAAATTAA

Domains

Predicted by InterProScan.

AMIN domain (AMIN)

(54-128)

Bacterial type II and III secretion system protein (Secretin)

(554-708)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-447)

Secretin and TonB N terminus short domain (STN)

(304-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

48.261

100

0.486
  pilQ Acinetobacter baumannii D1279779

39.919

100

0.413
  pilQ Acinetobacter baumannii strain A118

39.919

100

0.413
  comQ Acinetobacter baylyi ADP1

41.029

100

0.413
  pilQ Legionella pneumophila strain Lp02

39.25

97.059

0.381
  pilQ Legionella pneumophila strain ERS1305867

39.244

96.359

0.378

Multiple sequence alignment