Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   ABXG87_RS10115 Genome accession   NZ_AP031488
Coordinates   2117407..2118642 (+) Length   411 a.a.
NCBI ID   WP_045769301.1    Uniprot ID   A0AAX1Y9U4
Organism   Streptococcus salivarius strain NBRC 13956     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2112407..2123642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS10085 (Ssa13956_19220) - 2112874..2115468 (+) 2595 WP_045769302.1 YfhO family protein -
  ABXG87_RS10105 (Ssa13956_19230) - 2116023..2116706 (-) 684 WP_353551612.1 YoaK family protein -
  ABXG87_RS10110 (Ssa13956_19240) rlmH 2116722..2117201 (-) 480 WP_002887123.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ABXG87_RS10115 (Ssa13956_19250) htrA 2117407..2118642 (+) 1236 WP_045769301.1 trypsin-like peptidase domain-containing protein Regulator
  ABXG87_RS10120 (Ssa13956_19260) spo0J 2118709..2119476 (+) 768 WP_045769300.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 411 a.a.        Molecular weight: 42896.04 Da        Isoelectric Point: 4.6259

>NTDB_id=109829 ABXG87_RS10115 WP_045769301.1 2117407..2118642(+) (htrA) [Streptococcus salivarius strain NBRC 13956]
MKKFNWKKIVAPIAMLVIGLLGGLLGAFILLTAAGVSFTNSTDTGVKTAKTVYNNTTDTTKAVKKVQNAVVSVINYQEGS
SSDSLNELYGHIFGGDDSSDSSQDKSKDSDGLQVAGEGSGVIYKKDGKEAYIVTNNHVVDGAKKLEIMLSDGSKITGELV
GKDTYSDLAVVKVSSDKIKTVAEFADSNSLTVGEKAIAIGSPLGTEYANSVTEGIVSSLSRTVTMQNDNGETVSTNAIQT
DAAINPGNSGGALVNIEGQVIGINSSKISSTSAVAGSAVEGMGFAIPSNDVVEIINQLEKDGKVTRPALGISMADLNSLS
SSATSKLDLPDDVKAGVVVGSVQKGMPADGKLQENDVITEIDGKEISSKTDIQTNLYSHSIGDTIKVTFYRGKEKKTEEL
KLTKSTEDLSD

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=109829 ABXG87_RS10115 WP_045769301.1 2117407..2118642(+) (htrA) [Streptococcus salivarius strain NBRC 13956]
GTGAAAAAATTTAACTGGAAAAAAATAGTAGCGCCAATTGCAATGCTTGTTATTGGCTTACTAGGTGGTTTACTAGGTGC
CTTTATCCTACTAACAGCAGCAGGGGTATCTTTTACCAATTCAACAGATACAGGTGTTAAAACAGCTAAGACCGTATACA
ATAATACAACAGATACAACTAAAGCTGTTAAGAAAGTACAAAATGCCGTTGTTTCTGTCATCAATTACCAAGAAGGGTCA
TCTTCAGATTCTCTAAATGAACTTTATGGCCATATCTTTGGTGGAGATGATAGTTCTGATTCTAGCCAAGACAAATCAAA
AGATTCTGATGGGTTGCAAGTCGCTGGTGAAGGTTCTGGAGTCATCTATAAAAAAGATGGGAAAGAGGCCTACATCGTAA
CCAACAACCACGTTGTCGATGGCGCTAAAAAACTTGAAATCATGCTTTCAGATGGATCAAAAATTACTGGTGAACTCGTT
GGTAAAGATACTTACTCTGACCTAGCAGTTGTCAAAGTTTCTTCAGATAAAATTAAAACCGTAGCGGAATTTGCAGACTC
AAACTCTCTCACAGTCGGTGAGAAGGCAATTGCTATCGGTAGCCCACTTGGTACCGAATACGCCAACTCAGTAACAGAGG
GAATCGTTTCTAGCCTTAGCCGTACCGTAACTATGCAAAACGACAATGGTGAAACTGTTTCAACAAATGCTATCCAAACA
GATGCTGCCATTAACCCTGGTAACTCAGGTGGTGCCTTAGTCAATATCGAAGGACAAGTTATCGGTATTAACTCAAGTAA
AATTTCATCAACGTCAGCAGTCGCTGGTAGCGCCGTTGAAGGTATGGGATTTGCCATTCCATCAAACGATGTTGTCGAGA
TTATCAATCAATTGGAAAAAGACGGTAAAGTTACACGACCAGCCCTAGGAATCTCAATGGCCGATCTTAACAGCCTTTCT
AGCAGTGCAACTTCTAAATTAGATTTACCAGATGATGTGAAAGCTGGAGTTGTAGTCGGCAGCGTTCAAAAAGGTATGCC
AGCTGACGGTAAACTTCAAGAAAATGATGTTATCACTGAAATTGACGGTAAGGAAATCAGCTCAAAAACTGATATTCAAA
CCAATCTTTACAGCCATAGTATCGGAGATACAATCAAGGTAACCTTCTATCGTGGTAAAGAGAAGAAAACTGAAGAACTT
AAATTAACAAAATCTACAGAAGACTTGTCTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.787

98.054

0.606

  htrA Streptococcus gordonii str. Challis substr. CH1

57.389

98.783

0.567

  htrA Streptococcus pneumoniae Rx1

54.279

99.513

0.54

  htrA Streptococcus pneumoniae R6

54.279

99.513

0.54

  htrA Streptococcus pneumoniae TIGR4

54.279

99.513

0.54

  htrA Streptococcus pneumoniae D39

54.279

99.513

0.54

  htrA Streptococcus mitis NCTC 12261

54.279

99.513

0.54


Multiple sequence alignment