Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   ACL43R_RS09565 Genome accession   NZ_CP180647
Coordinates   1903898..1905115 (+) Length   405 a.a.
NCBI ID   WP_416037561.1    Uniprot ID   -
Organism   Lactococcus formosensis strain JAL11     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1898898..1910115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL43R_RS09535 (ACL43R_09535) eeP 1898913..1900160 (-) 1248 WP_416037558.1 RIP metalloprotease RseP Regulator
  ACL43R_RS09540 (ACL43R_09540) - 1900337..1901131 (-) 795 WP_017369964.1 phosphatidate cytidylyltransferase -
  ACL43R_RS09545 (ACL43R_09545) - 1901128..1901865 (-) 738 WP_416037559.1 isoprenyl transferase -
  ACL43R_RS09550 (ACL43R_09550) yajC 1902064..1902396 (-) 333 WP_017369966.1 preprotein translocase subunit YajC -
  ACL43R_RS09555 (ACL43R_09555) - 1902471..1903118 (-) 648 WP_416037560.1 DNA alkylation repair protein -
  ACL43R_RS09560 (ACL43R_09560) rlmH 1903115..1903594 (-) 480 WP_096368977.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ACL43R_RS09565 (ACL43R_09565) htrA 1903898..1905115 (+) 1218 WP_416037561.1 S1C family serine protease Regulator
  ACL43R_RS09570 (ACL43R_09570) - 1905212..1906210 (+) 999 WP_096368976.1 glycosyltransferase family 4 protein -
  ACL43R_RS09575 (ACL43R_09575) - 1906223..1907557 (+) 1335 WP_165712757.1 glycosyltransferase family 4 protein -
  ACL43R_RS09580 (ACL43R_09580) - 1907608..1907832 (+) 225 WP_017369972.1 YkuJ family protein -
  ACL43R_RS09585 (ACL43R_09585) - 1907863..1908912 (-) 1050 WP_017369973.1 BMP family lipoprotein -
  ACL43R_RS09590 (ACL43R_09590) - 1909071..1909820 (-) 750 WP_270741303.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 41820.57 Da        Isoelectric Point: 4.6948

>NTDB_id=1097166 ACL43R_RS09565 WP_416037561.1 1903898..1905115(+) (htrA) [Lactococcus formosensis strain JAL11]
MAKKNIASLLITGVAGGAIALGGSAIYQNMTNTPSSNNTSDNSVSTVNVQVNTDTTKAIKKISNTVVSVLNYQKSSSSND
FEKIFGGGDTSSNESNSPQLSGEGSGVIYKKDGNTAYIVTNYHVIEGASSLEVLMAGGQKVTAEVVGSDAYSDLAVLKID
AKYVQETATFGNSDKLTVGEPAIAVGSPLGSEYANSATEGIVSSLNRNVTLQNSQGQTINVNAIQTDAAINPGNSGGALI
NIQGQVIGITSSKITSTPSGTGSSGVSVEGMGFAIPANDVVNIINKLEKDGKVIRPALGVQMVNLSSLSQNMLASLNLPE
DVTNGVAVAEVQSGMPAAKAGLKQGDVIVKINDDEITSSVNLQSTLYKSSIGDTIKVTYYRDGKQATTNIKLDKTSSDIN
FDKQN

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1097166 ACL43R_RS09565 WP_416037561.1 1903898..1905115(+) (htrA) [Lactococcus formosensis strain JAL11]
ATGGCAAAAAAAAATATCGCCTCATTACTTATTACGGGCGTAGCCGGAGGTGCTATCGCTCTTGGGGGTAGTGCTATCTA
CCAAAATATGACTAACACGCCGTCATCTAATAATACTTCGGACAATTCTGTAAGTACAGTTAACGTACAAGTCAATACAG
ATACAACCAAAGCAATCAAGAAAATTTCAAACACTGTTGTTTCCGTACTTAATTACCAAAAATCGTCTTCAAGCAACGAC
TTTGAAAAGATTTTCGGCGGAGGCGACACAAGCAGCAATGAGAGTAACTCACCACAGCTATCTGGAGAAGGTTCTGGGGT
TATCTATAAAAAGGACGGCAATACCGCATACATCGTAACCAACTATCACGTTATTGAAGGTGCGTCTTCCTTAGAAGTTC
TCATGGCTGGTGGTCAAAAAGTAACTGCCGAAGTTGTTGGTTCCGATGCTTATTCGGATTTAGCTGTCCTCAAAATTGAT
GCCAAGTATGTCCAAGAAACCGCAACGTTCGGCAACTCTGACAAACTTACTGTTGGTGAACCTGCTATCGCCGTTGGTTC
TCCTCTTGGAAGTGAGTATGCTAACTCAGCAACAGAAGGTATTGTTTCTAGTCTTAATCGCAATGTTACATTGCAAAACA
GCCAAGGCCAAACCATTAATGTTAATGCTATTCAAACAGATGCAGCAATAAACCCCGGGAACTCTGGCGGTGCACTCATC
AATATTCAAGGACAAGTCATCGGGATCACCTCAAGTAAAATTACCTCAACACCAAGTGGTACAGGCAGCAGCGGTGTCTC
TGTAGAAGGCATGGGGTTTGCGATTCCAGCCAATGATGTCGTCAATATTATCAATAAATTGGAAAAAGATGGCAAAGTTA
TTCGACCTGCTCTGGGTGTGCAAATGGTTAACCTATCAAGTCTTTCACAAAATATGTTGGCTTCACTCAACCTTCCTGAA
GACGTGACTAATGGTGTTGCTGTCGCTGAAGTTCAATCAGGAATGCCTGCTGCCAAAGCTGGACTCAAGCAAGGCGACGT
TATTGTCAAAATCAATGATGACGAAATCACTTCAAGTGTTAACCTTCAAAGCACACTTTATAAATCTTCAATTGGTGATA
CGATTAAGGTAACTTATTATCGTGACGGAAAACAAGCTACTACAAATATCAAGTTAGATAAAACAAGTAGTGATATCAAT
TTTGACAAGCAAAATTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(296-392)

Peptidase family M50 (Peptidase_M50)

(278-396)

Trypsin-like peptidase domain (Trypsin_2)

(104-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

56.614

93.333

0.528
  htrA Streptococcus mitis NCTC 12261

53.634

98.519

0.528
  htrA Streptococcus pneumoniae Rx1

53.383

98.519

0.526
  htrA Streptococcus pneumoniae D39

53.383

98.519

0.526
  htrA Streptococcus pneumoniae R6

53.383

98.519

0.526
  htrA Streptococcus pneumoniae TIGR4

53.383

98.519

0.526
  htrA Streptococcus gordonii str. Challis substr. CH1

54.22

96.543

0.523

Multiple sequence alignment