Detailed information    

insolico Bioinformatically predicted

Overview


Name   eeP   Type   Regulator
Locus tag   ACL43R_RS09535 Genome accession   NZ_CP180647
Coordinates   1898913..1900160 (-) Length   415 a.a.
NCBI ID   WP_416037558.1    Uniprot ID   -
Organism   Lactococcus formosensis strain JAL11     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1893913..1905160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL43R_RS09525 (ACL43R_09525) - 1896047..1896691 (-) 645 Protein_1842 PolC-type DNA polymerase III N-terminal domain-containing protein -
  ACL43R_RS09530 (ACL43R_09530) - 1897036..1898886 (-) 1851 WP_165712749.1 proline--tRNA ligase -
  ACL43R_RS09535 (ACL43R_09535) eeP 1898913..1900160 (-) 1248 WP_416037558.1 RIP metalloprotease RseP Regulator
  ACL43R_RS09540 (ACL43R_09540) - 1900337..1901131 (-) 795 WP_017369964.1 phosphatidate cytidylyltransferase -
  ACL43R_RS09545 (ACL43R_09545) - 1901128..1901865 (-) 738 WP_416037559.1 isoprenyl transferase -
  ACL43R_RS09550 (ACL43R_09550) yajC 1902064..1902396 (-) 333 WP_017369966.1 preprotein translocase subunit YajC -
  ACL43R_RS09555 (ACL43R_09555) - 1902471..1903118 (-) 648 WP_416037560.1 DNA alkylation repair protein -
  ACL43R_RS09560 (ACL43R_09560) rlmH 1903115..1903594 (-) 480 WP_096368977.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ACL43R_RS09565 (ACL43R_09565) htrA 1903898..1905115 (+) 1218 WP_416037561.1 S1C family serine protease Regulator

Sequence


Protein


Download         Length: 415 a.a.        Molecular weight: 45047.43 Da        Isoelectric Point: 5.8072

>NTDB_id=1097165 ACL43R_RS09535 WP_416037558.1 1898913..1900160(-) (eeP) [Lactococcus formosensis strain JAL11]
MIQTLVTFIIVFGIIVVVHEYGHLFFAKRAGILVREFSIGMGPKIFAHQAKDGTFYSIRILPLGGYVRMAGWGDDTTEIK
KGTPASLMIVENQVVKINLSERVTLENSVPMLVTEYDFEEALFIEGEVFGETKRYSVDHDATIIEADGTELRIAPRDVQY
QSASVLGKILTNFAGPLNNFILGIIAFIIITFMQGGVPSNTNQIGQVQSGTPAYSAGLQSKDKIQAVNGEKTNNWEEVVQ
RIGANDGSEIKLDIERAGATKTLELKPEKIDGRYRIGITQTIKTGFLDKLTGGFTQAANATTLIFKALGNLIAQPSLDKL
GGPVAIYDLSGQAAREGLLSVIALLAMLSINLGIVNLIPIPVLDGGKIVLNIVEALRGKPLSQEKEGILTLVGLGFMVVL
MIAVTWNDILRAFIR

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=1097165 ACL43R_RS09535 WP_416037558.1 1898913..1900160(-) (eeP) [Lactococcus formosensis strain JAL11]
TTGATTCAAACATTGGTGACATTTATCATTGTCTTTGGTATTATTGTTGTTGTACATGAGTATGGTCATCTATTCTTTGC
TAAGCGCGCGGGGATTTTAGTCCGCGAGTTTTCCATTGGAATGGGCCCCAAAATTTTTGCACATCAAGCCAAAGATGGCA
CGTTTTATAGCATTCGTATACTTCCTCTTGGAGGTTATGTCCGCATGGCGGGCTGGGGCGATGATACAACGGAAATAAAA
AAAGGAACCCCGGCATCTTTGATGATTGTTGAAAATCAGGTGGTTAAAATTAATCTTTCTGAGCGGGTAACTTTGGAAAA
TAGTGTCCCCATGCTGGTCACTGAATACGATTTTGAAGAAGCACTTTTCATCGAAGGAGAAGTTTTTGGTGAAACAAAAC
GTTATTCAGTTGACCATGATGCAACAATTATCGAAGCGGATGGCACGGAACTTCGTATCGCTCCACGCGACGTACAATAT
CAAAGTGCCAGCGTTCTCGGCAAGATTTTAACAAATTTCGCTGGTCCTTTAAATAACTTTATTTTAGGGATTATAGCTTT
TATTATCATCACTTTTATGCAAGGTGGTGTACCTTCTAATACAAATCAAATCGGACAAGTCCAATCTGGCACTCCTGCTT
ATTCGGCAGGTTTACAGTCAAAGGATAAAATCCAAGCAGTCAATGGTGAAAAAACGAATAACTGGGAAGAAGTTGTCCAA
AGGATCGGTGCAAATGATGGCAGTGAAATCAAGCTGGATATCGAACGTGCTGGTGCGACGAAGACACTGGAGCTCAAGCC
AGAAAAAATTGACGGAAGATACCGTATTGGTATCACTCAAACAATCAAAACAGGCTTTTTAGATAAGCTAACGGGAGGCT
TTACTCAGGCTGCTAACGCAACAACGTTGATATTTAAAGCTTTAGGTAACCTCATTGCACAGCCAAGTCTTGATAAACTT
GGTGGACCAGTGGCTATTTATGATTTAAGTGGGCAGGCAGCCCGAGAAGGTCTATTATCTGTTATCGCTTTACTTGCCAT
GCTCTCAATCAATCTGGGAATCGTAAATTTAATCCCAATCCCCGTCCTTGACGGAGGGAAAATTGTCCTCAATATTGTTG
AGGCCCTACGAGGCAAACCACTTTCACAAGAAAAAGAAGGAATTTTAACACTTGTTGGTCTTGGCTTTATGGTGGTCTTG
ATGATTGCGGTGACTTGGAATGATATCCTCCGAGCCTTTATTAGATAA

Domains


Predicted by InterproScan.

(7-400)

(204-256)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

56.086

100

0.566

  eeP Streptococcus thermophilus LMD-9

55.847

100

0.564


Multiple sequence alignment