Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ACM0CY_RS02690 | Genome accession | NZ_CP180570 |
| Coordinates | 562282..563391 (-) | Length | 369 a.a. |
| NCBI ID | WP_042882153.1 | Uniprot ID | A0A2L0TPJ0 |
| Organism | Aeromonas caviae strain BJ093 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 525469..586776 | 562282..563391 | within | 0 |
Gene organization within MGE regions
Location: 525469..586776
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACM0CY_RS02505 | rlmD | 526234..527586 (+) | 1353 | WP_415870563.1 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | - |
| ACM0CY_RS02510 | - | 527774..528283 (+) | 510 | WP_415870564.1 | GNAT family N-acetyltransferase | - |
| ACM0CY_RS02515 | - | 528365..528535 (+) | 171 | WP_167418745.1 | DUF5363 family protein | - |
| ACM0CY_RS02520 | tppF | 528504..529118 (-) | 615 | WP_042014943.1 | type IVa pilus pseudopilin TppF | - |
| ACM0CY_RS02525 | - | 529159..529947 (+) | 789 | WP_042864469.1 | TatD family hydrolase | - |
| ACM0CY_RS02530 | - | 530161..531435 (+) | 1275 | WP_010673026.1 | NupC/NupG family nucleoside CNT transporter | - |
| ACM0CY_RS02535 | - | 531559..531729 (+) | 171 | WP_010673027.1 | XapX domain-containing protein | - |
| ACM0CY_RS02540 | deoC | 532117..532890 (+) | 774 | WP_039039946.1 | deoxyribose-phosphate aldolase | - |
| ACM0CY_RS02545 | deoA | 532973..534304 (+) | 1332 | WP_415870565.1 | thymidine phosphorylase | - |
| ACM0CY_RS02550 | - | 534319..535527 (+) | 1209 | WP_415870566.1 | phosphopentomutase | - |
| ACM0CY_RS02555 | deoD | 535661..536377 (+) | 717 | WP_005341325.1 | purine-nucleoside phosphorylase | - |
| ACM0CY_RS02560 | - | 536442..538688 (-) | 2247 | WP_415870567.1 | PAS domain S-box protein | - |
| ACM0CY_RS02565 | - | 538754..539362 (-) | 609 | WP_010673032.1 | AhpA/YtjB family protein | - |
| ACM0CY_RS02570 | serB | 539556..540560 (+) | 1005 | WP_415870568.1 | phosphoserine phosphatase SerB | - |
| ACM0CY_RS02575 | - | 540589..541494 (+) | 906 | WP_415870569.1 | alpha/beta fold hydrolase | - |
| ACM0CY_RS02580 | - | 541552..543927 (-) | 2376 | WP_415870570.1 | PilZ domain-containing protein | - |
| ACM0CY_RS02585 | radA | 544028..545392 (+) | 1365 | WP_010673036.1 | DNA repair protein RadA | - |
| ACM0CY_RS02590 | - | 545446..545832 (-) | 387 | WP_029313755.1 | PilZ domain-containing protein | - |
| ACM0CY_RS02595 | - | 545935..546417 (-) | 483 | WP_029313757.1 | Rsd/AlgQ family anti-sigma factor | - |
| ACM0CY_RS02600 | hupA | 546756..547028 (+) | 273 | WP_005305063.1 | nucleoid-associated protein HU-alpha | - |
| ACM0CY_RS02605 | - | 547142..547567 (+) | 426 | WP_029313758.1 | hypothetical protein | - |
| ACM0CY_RS02610 | - | 547649..547798 (-) | 150 | WP_128273066.1 | hypothetical protein | - |
| ACM0CY_RS02615 | dusA | 547801..548853 (-) | 1053 | WP_415870571.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| ACM0CY_RS02620 | - | 548942..550048 (+) | 1107 | WP_415870572.1 | site-specific integrase | - |
| ACM0CY_RS02625 | - | 550261..551931 (+) | 1671 | WP_415870573.1 | tetratricopeptide repeat protein | - |
| ACM0CY_RS02630 | - | 551934..552203 (+) | 270 | WP_415870574.1 | hypothetical protein | - |
| ACM0CY_RS02640 | - | 553230..553966 (-) | 737 | Protein_495 | integrase core domain-containing protein | - |
| ACM0CY_RS02650 | - | 555656..555919 (+) | 264 | WP_045523228.1 | pyocin activator PrtN family protein | - |
| ACM0CY_RS02655 | zur | 556501..556959 (+) | 459 | WP_039039955.1 | zinc uptake transcriptional repressor Zur | - |
| ACM0CY_RS02660 | - | 556949..557410 (+) | 462 | WP_010673043.1 | chemotaxis protein CheX | - |
| ACM0CY_RS02665 | - | 557416..557643 (+) | 228 | WP_039039956.1 | hypothetical protein | - |
| ACM0CY_RS02670 | brnQ | 557733..559040 (-) | 1308 | WP_041211055.1 | branched-chain amino acid transport system II carrier protein | - |
| ACM0CY_RS02675 | - | 559230..559940 (-) | 711 | WP_039039957.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| ACM0CY_RS02680 | srmB | 560068..561288 (+) | 1221 | WP_041210934.1 | ATP-dependent RNA helicase SrmB | - |
| ACM0CY_RS02685 | yaaA | 561476..562249 (-) | 774 | WP_415870575.1 | peroxide stress protein YaaA | - |
| ACM0CY_RS02690 | pilU | 562282..563391 (-) | 1110 | WP_042882153.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACM0CY_RS02695 | pilT | 563415..564449 (-) | 1035 | WP_010673050.1 | type IVa pilus ATPase TapT | Machinery gene |
| ACM0CY_RS02700 | - | 564489..565190 (+) | 702 | WP_203764125.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| ACM0CY_RS02705 | proC | 565316..566140 (+) | 825 | WP_043153027.1 | pyrroline-5-carboxylate reductase | - |
| ACM0CY_RS02710 | - | 566164..566715 (+) | 552 | WP_415870576.1 | YggT family protein | - |
| ACM0CY_RS02715 | yggU | 566715..567014 (+) | 300 | WP_043153029.1 | DUF167 family protein YggU | - |
| ACM0CY_RS02720 | - | 567033..567452 (+) | 420 | WP_043153031.1 | DUF4426 domain-containing protein | - |
| ACM0CY_RS02725 | - | 567528..568358 (-) | 831 | WP_415870577.1 | lysostaphin resistance A-like protein | - |
| ACM0CY_RS02730 | - | 568520..568810 (-) | 291 | WP_039039963.1 | hypothetical protein | - |
| ACM0CY_RS02735 | - | 568860..569234 (-) | 375 | WP_039039964.1 | YacL family protein | - |
| ACM0CY_RS02740 | - | 569441..570556 (+) | 1116 | WP_039039965.1 | sugar diacid recognition domain-containing protein | - |
| ACM0CY_RS02745 | - | 570676..571938 (+) | 1263 | WP_039039966.1 | GntP family permease | - |
| ACM0CY_RS02750 | - | 571948..573081 (+) | 1134 | WP_104455232.1 | glycerate kinase | - |
| ACM0CY_RS02755 | - | 573343..573906 (+) | 564 | WP_103857977.1 | NnrU family protein | - |
| ACM0CY_RS02760 | - | 573966..574502 (+) | 537 | WP_103857976.1 | glutathione peroxidase | - |
| ACM0CY_RS02765 | - | 574585..575520 (+) | 936 | WP_010673064.1 | LysR family transcriptional regulator | - |
| ACM0CY_RS02770 | - | 575703..576899 (+) | 1197 | WP_103857975.1 | NupC/NupG family nucleoside CNT transporter | - |
| ACM0CY_RS02775 | - | 577499..577993 (-) | 495 | WP_103857996.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| ACM0CY_RS02780 | arfB | 578020..578436 (-) | 417 | WP_415870578.1 | alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB | - |
| ACM0CY_RS02785 | glnK | 578638..578976 (+) | 339 | WP_005332325.1 | P-II family nitrogen regulator | - |
| ACM0CY_RS02790 | - | 579205..580212 (+) | 1008 | WP_415870579.1 | Fe(3+) ABC transporter substrate-binding protein | - |
| ACM0CY_RS02795 | - | 580252..581877 (+) | 1626 | WP_415870580.1 | ABC transporter permease | - |
| ACM0CY_RS02800 | - | 581918..582952 (+) | 1035 | WP_415870581.1 | ABC transporter ATP-binding protein | - |
| ACM0CY_RS02805 | - | 583042..583947 (+) | 906 | WP_042864452.1 | Dyp-type peroxidase | - |
| ACM0CY_RS02810 | argR | 584027..584497 (-) | 471 | WP_005308670.1 | transcriptional regulator ArgR | - |
| ACM0CY_RS02815 | - | 584698..585438 (+) | 741 | WP_043153042.1 | ATP-binding cassette domain-containing protein | - |
| ACM0CY_RS02820 | - | 585463..586200 (+) | 738 | WP_010673073.1 | arginine ABC transporter substrate-binding protein | - |
Sequence
Protein
Download Length: 369 a.a. Molecular weight: 40901.04 Da Isoelectric Point: 6.3155
>NTDB_id=1096695 ACM0CY_RS02690 WP_042882153.1 562282..563391(-) (pilU) [Aeromonas caviae strain BJ093]
MNMDVLLAALVEQKGSDLFITVDAPPTLKVNGRLVSLGPAPLDKTTALALIRESLDETHFERFLHTREANYAIQRGSLGR
FRVSAFWQQDMPGMVLRRIETRIPTFDELVLPPILQEVAMAKRGLVLFVGATGAGKSTTQAAMIGFRNQHGDGHILTVED
PVEFVHQHDRCLVTQREVGIDTASFDVALKNSLRQAPDVILIGEIRSQETMEFAIQFAETGHLCLATLHANNANQALDRI
LHLVPQEKHRQFLFDLSFNLRAIVAQQLLPSAHGQRRVAAFEILLNTPLVTDIIRKGEMHRLKEVMTKSGELGMQTFDQA
LFTLFCAGQIGYSEALAHADSANDLRLLIKLSGREQLGAGTLDNVTLDE
MNMDVLLAALVEQKGSDLFITVDAPPTLKVNGRLVSLGPAPLDKTTALALIRESLDETHFERFLHTREANYAIQRGSLGR
FRVSAFWQQDMPGMVLRRIETRIPTFDELVLPPILQEVAMAKRGLVLFVGATGAGKSTTQAAMIGFRNQHGDGHILTVED
PVEFVHQHDRCLVTQREVGIDTASFDVALKNSLRQAPDVILIGEIRSQETMEFAIQFAETGHLCLATLHANNANQALDRI
LHLVPQEKHRQFLFDLSFNLRAIVAQQLLPSAHGQRRVAAFEILLNTPLVTDIIRKGEMHRLKEVMTKSGELGMQTFDQA
LFTLFCAGQIGYSEALAHADSANDLRLLIKLSGREQLGAGTLDNVTLDE
Nucleotide
Download Length: 1110 bp
>NTDB_id=1096695 ACM0CY_RS02690 WP_042882153.1 562282..563391(-) (pilU) [Aeromonas caviae strain BJ093]
ATGAACATGGATGTTCTGCTCGCCGCACTGGTTGAACAAAAGGGCTCGGATCTCTTCATCACGGTCGATGCTCCCCCGAC
CCTCAAGGTCAACGGGCGTCTGGTGTCGCTCGGACCAGCCCCCCTCGACAAGACGACGGCGCTGGCGTTGATCAGGGAGA
GCCTGGACGAGACCCACTTCGAACGCTTCCTGCACACCCGCGAGGCCAACTACGCCATCCAGCGAGGCTCGCTGGGGCGC
TTTCGGGTCAGCGCCTTCTGGCAACAGGATATGCCGGGCATGGTGCTGCGACGCATCGAGACCCGCATCCCCACCTTTGA
CGAGCTGGTGCTGCCTCCCATCCTGCAGGAGGTCGCCATGGCCAAACGCGGGCTGGTGCTCTTCGTCGGCGCCACTGGCG
CCGGCAAGTCCACCACCCAGGCGGCCATGATCGGCTTTCGCAACCAGCACGGTGACGGCCACATCCTGACGGTGGAGGAT
CCGGTGGAGTTCGTCCATCAGCACGATCGCTGTCTGGTGACCCAGCGGGAGGTGGGGATCGACACCGCATCCTTCGATGT
CGCCCTCAAAAACTCCCTGCGCCAGGCCCCGGATGTCATCCTCATCGGTGAAATCCGCTCTCAGGAGACCATGGAGTTCG
CCATCCAGTTCGCCGAGACAGGGCACCTCTGCCTCGCCACCTTGCACGCCAACAATGCCAACCAGGCGCTGGATCGCATC
CTGCATCTGGTCCCCCAGGAGAAGCACCGCCAGTTCCTGTTCGATCTCTCCTTCAACCTACGCGCCATCGTCGCCCAGCA
GCTGCTCCCCTCCGCTCATGGGCAGCGCCGGGTCGCCGCCTTCGAGATCCTGCTCAACACCCCGCTCGTCACCGACATCA
TCCGCAAGGGAGAGATGCACAGACTCAAGGAGGTGATGACCAAATCCGGCGAGCTCGGCATGCAGACCTTCGATCAGGCG
CTGTTCACCCTGTTCTGCGCCGGCCAAATTGGCTACAGTGAGGCCCTTGCCCATGCCGACTCCGCCAACGACCTGCGACT
GCTCATCAAGCTGTCGGGTCGCGAGCAGCTGGGCGCAGGCACTCTCGACAACGTGACCCTGGATGAATGA
ATGAACATGGATGTTCTGCTCGCCGCACTGGTTGAACAAAAGGGCTCGGATCTCTTCATCACGGTCGATGCTCCCCCGAC
CCTCAAGGTCAACGGGCGTCTGGTGTCGCTCGGACCAGCCCCCCTCGACAAGACGACGGCGCTGGCGTTGATCAGGGAGA
GCCTGGACGAGACCCACTTCGAACGCTTCCTGCACACCCGCGAGGCCAACTACGCCATCCAGCGAGGCTCGCTGGGGCGC
TTTCGGGTCAGCGCCTTCTGGCAACAGGATATGCCGGGCATGGTGCTGCGACGCATCGAGACCCGCATCCCCACCTTTGA
CGAGCTGGTGCTGCCTCCCATCCTGCAGGAGGTCGCCATGGCCAAACGCGGGCTGGTGCTCTTCGTCGGCGCCACTGGCG
CCGGCAAGTCCACCACCCAGGCGGCCATGATCGGCTTTCGCAACCAGCACGGTGACGGCCACATCCTGACGGTGGAGGAT
CCGGTGGAGTTCGTCCATCAGCACGATCGCTGTCTGGTGACCCAGCGGGAGGTGGGGATCGACACCGCATCCTTCGATGT
CGCCCTCAAAAACTCCCTGCGCCAGGCCCCGGATGTCATCCTCATCGGTGAAATCCGCTCTCAGGAGACCATGGAGTTCG
CCATCCAGTTCGCCGAGACAGGGCACCTCTGCCTCGCCACCTTGCACGCCAACAATGCCAACCAGGCGCTGGATCGCATC
CTGCATCTGGTCCCCCAGGAGAAGCACCGCCAGTTCCTGTTCGATCTCTCCTTCAACCTACGCGCCATCGTCGCCCAGCA
GCTGCTCCCCTCCGCTCATGGGCAGCGCCGGGTCGCCGCCTTCGAGATCCTGCTCAACACCCCGCTCGTCACCGACATCA
TCCGCAAGGGAGAGATGCACAGACTCAAGGAGGTGATGACCAAATCCGGCGAGCTCGGCATGCAGACCTTCGATCAGGCG
CTGTTCACCCTGTTCTGCGCCGGCCAAATTGGCTACAGTGAGGCCCTTGCCCATGCCGACTCCGCCAACGACCTGCGACT
GCTCATCAAGCTGTCGGGTCGCGAGCAGCTGGGCGCAGGCACTCTCGACAACGTGACCCTGGATGAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Vibrio cholerae strain A1552 |
60.598 |
99.729 |
0.604 |
| pilU | Pseudomonas stutzeri DSM 10701 |
58.974 |
95.122 |
0.561 |
| pilU | Acinetobacter baylyi ADP1 |
57.79 |
95.664 |
0.553 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.857 |
91.057 |
0.39 |
| pilT | Legionella pneumophila strain Lp02 |
40.816 |
92.954 |
0.379 |
| pilT | Legionella pneumophila strain ERS1305867 |
40.816 |
92.954 |
0.379 |